A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

по Scharm, Martin, Waltemath, Dagmar
Опубликовано в: F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

по Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Опубликовано в: Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

по Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Опубликовано в: Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

по Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Опубликовано в: J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

по Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Опубликовано в: Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

по Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Опубликовано в: PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

по Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Опубликовано в: J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

по Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Опубликовано в: JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

по Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Опубликовано 2010

Notions of similarity for systems biology models

по Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Опубликовано в: Brief Bioinform (2016)

Notions of similarity for systems biology models

по Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Опубликовано в: Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

по Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Опубликовано в: Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

по Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Опубликовано в: J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

по Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Опубликовано в: BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

по Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Опубликовано в: BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

по Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Опубликовано в: J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

по Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Опубликовано в: J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

по Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Опубликовано в: J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

по Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Опубликовано в: J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

по Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Опубликовано в: J Integr Bioinform (2020)