A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

di Scharm, Martin, Waltemath, Dagmar
Pubblicato in F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

di Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Pubblicato in Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

di Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Pubblicato in Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

di Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Pubblicato in J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

di Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Pubblicato in Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

di Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Pubblicato in PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

di Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Pubblicato in J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

di Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Pubblicato in JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

di Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Pubblicazione 2010

Notions of similarity for systems biology models

di Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Pubblicato in Brief Bioinform (2016)

Notions of similarity for systems biology models

di Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Pubblicato in Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

di Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Pubblicato in Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

di Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Pubblicato in J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

di Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Pubblicato in BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

di Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Pubblicato in BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

di Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Pubblicato in J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

di Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Pubblicato in J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

di Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Pubblicato in J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

di Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Pubblicato in J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

di Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Pubblicato in J Integr Bioinform (2020)