A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

le Scharm, Martin, Waltemath, Dagmar
Foilsithe in F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

le Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Foilsithe in Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

le Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Foilsithe in Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

le Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Foilsithe in J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

le Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Foilsithe in Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

le Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Foilsithe in PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

le Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Foilsithe in J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

le Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Foilsithe in JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

le Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Foilsithe 2010

Notions of similarity for systems biology models

le Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Foilsithe in Brief Bioinform (2016)

Notions of similarity for systems biology models

le Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Foilsithe in Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

le Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Foilsithe in Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

le Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Foilsithe in J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

le Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Foilsithe in BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

le Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Foilsithe in BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

le Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Foilsithe in J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

le Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Foilsithe in J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

le Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Foilsithe in J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

le Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Foilsithe in J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

le Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Foilsithe in J Integr Bioinform (2020)