A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

Tekijä Scharm, Martin, Waltemath, Dagmar
Julkaisussa F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

Tekijä Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Julkaisussa Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

Tekijä Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Julkaisussa Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

Tekijä Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Julkaisussa J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

Tekijä Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Julkaisussa Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

Tekijä Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Julkaisussa PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

Tekijä Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Julkaisussa J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

Tekijä Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Julkaisussa JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

Tekijä Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Julkaistu 2010

Notions of similarity for systems biology models

Tekijä Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Julkaisussa Brief Bioinform (2016)

Notions of similarity for systems biology models

Tekijä Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Julkaisussa Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

Tekijä Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Julkaisussa Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

Tekijä Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Julkaisussa J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

Tekijä Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Julkaisussa BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

Tekijä Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Julkaisussa BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

Tekijä Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Julkaisussa J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

Tekijä Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Julkaisussa J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

Tekijä Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Julkaisussa J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Tekijä Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Julkaisussa J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

Tekijä Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Julkaisussa J Integr Bioinform (2020)