A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

nork Scharm, Martin, Waltemath, Dagmar
Argitaratua izan da F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

nork Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Argitaratua izan da Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

nork Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Argitaratua izan da Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

nork Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Argitaratua izan da J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

nork Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Argitaratua izan da Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

nork Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Argitaratua izan da PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

nork Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Argitaratua izan da J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

nork Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Argitaratua izan da JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

nork Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Argitaratua 2010

Notions of similarity for systems biology models

nork Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Argitaratua izan da Brief Bioinform (2016)

Notions of similarity for systems biology models

nork Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Argitaratua izan da Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

nork Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Argitaratua izan da Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

nork Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Argitaratua izan da J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

nork Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Argitaratua izan da BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

nork Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Argitaratua izan da BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

nork Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Argitaratua izan da J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

nork Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Argitaratua izan da J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

nork Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Argitaratua izan da J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

nork Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Argitaratua izan da J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

nork Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Argitaratua izan da J Integr Bioinform (2020)