A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

von Scharm, Martin, Waltemath, Dagmar
Veröffentlicht in F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

von Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Veröffentlicht in Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

von Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Veröffentlicht in Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

von Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Veröffentlicht in J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

von Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Veröffentlicht in Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

von Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Veröffentlicht in PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

von Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Veröffentlicht in J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

von Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Veröffentlicht in JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

von Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Veröffentlicht 2010

Notions of similarity for systems biology models

von Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Veröffentlicht in Brief Bioinform (2016)

Notions of similarity for systems biology models

von Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Veröffentlicht in Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

von Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Veröffentlicht in Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

von Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Veröffentlicht in J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

von Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Veröffentlicht in BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

von Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Veröffentlicht in BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

von Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Veröffentlicht in J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

von Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Veröffentlicht in J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

von Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Veröffentlicht in J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

von Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Veröffentlicht in J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

von Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Veröffentlicht in J Integr Bioinform (2020)