A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

af Scharm, Martin, Waltemath, Dagmar
Udgivet i F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

af Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Udgivet i Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

af Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Udgivet i Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

af Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Udgivet i J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

af Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Udgivet i Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

af Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Udgivet i PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

af Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Udgivet i J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

af Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Udgivet i JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

af Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Udgivet 2010

Notions of similarity for systems biology models

af Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Udgivet i Brief Bioinform (2016)

Notions of similarity for systems biology models

af Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Udgivet i Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

af Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Udgivet i Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

af Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Udgivet i J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

af Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Udgivet i BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

af Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Udgivet i BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

af Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Udgivet i J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

af Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Udgivet i J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

af Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Udgivet i J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

af Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Udgivet i J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

af Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Udgivet i J Integr Bioinform (2020)