A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

Autor Scharm, Martin, Waltemath, Dagmar
Vydáno v F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

Autor Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
Vydáno v Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

Autor Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
Vydáno v Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

Autor Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
Vydáno v J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

Autor Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
Vydáno v Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

Autor Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
Vydáno v PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

Autor Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
Vydáno v J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

Autor Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
Vydáno v JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

Autor Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
Vydáno 2010

Notions of similarity for systems biology models

Autor Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Vydáno v Brief Bioinform (2016)

Notions of similarity for systems biology models

Autor Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
Vydáno v Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

Autor Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
Vydáno v Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

Autor Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
Vydáno v J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

Autor Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
Vydáno v BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

Autor Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Vydáno v BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

Autor Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
Vydáno v J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

Autor Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
Vydáno v J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

Autor Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
Vydáno v J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

Autor Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Vydáno v J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

Autor Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
Vydáno v J Integr Bioinform (2020)