A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

অনুযায়ী Scharm, Martin, Waltemath, Dagmar
প্রকাশিত F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

অনুযায়ী Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
প্রকাশিত Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

অনুযায়ী Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
প্রকাশিত Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

অনুযায়ী Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
প্রকাশিত J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

অনুযায়ী Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
প্রকাশিত Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

অনুযায়ী Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
প্রকাশিত PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

অনুযায়ী Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
প্রকাশিত J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

অনুযায়ী Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
প্রকাশিত JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

অনুযায়ী Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
প্রকাশিত 2010

Notions of similarity for systems biology models

অনুযায়ী Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
প্রকাশিত Brief Bioinform (2016)

Notions of similarity for systems biology models

অনুযায়ী Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
প্রকাশিত Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

অনুযায়ী Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
প্রকাশিত Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

অনুযায়ী Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
প্রকাশিত J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

অনুযায়ী Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
প্রকাশিত BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

অনুযায়ী Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
প্রকাশিত BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

অনুযায়ী Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
প্রকাশিত J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

অনুযায়ী Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
প্রকাশিত J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

অনুযায়ী Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
প্রকাশিত J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

অনুযায়ী Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
প্রকাশিত J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

অনুযায়ী Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
প্রকাশিত J Integr Bioinform (2020)