A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

بواسطة Scharm, Martin, Waltemath, Dagmar
الحاوية / القاعدة F1000Res (2016)

Combining computational models, semantic annotations and simulation experiments in a graph database

بواسطة Henkel, Ron, Wolkenhauer, Olaf, Waltemath, Dagmar
الحاوية / القاعدة Database (Oxford) (2015)

An algorithm to detect and communicate the differences in computational models describing biological systems

بواسطة Scharm, Martin, Wolkenhauer, Olaf, Waltemath, Dagmar
الحاوية / القاعدة Bioinformatics (2016)

COMODI: an ontology to characterise differences in versions of computational models in biology

بواسطة Scharm, Martin, Waltemath, Dagmar, Mendes, Pedro, Wolkenhauer, Olaf
الحاوية / القاعدة J Biomed Semantics (2016)

SED-ML web tools: generate, modify and export standard-compliant simulation studies

بواسطة Bergmann, Frank T, Nickerson, David, Waltemath, Dagmar, Scharm, Martin
الحاوية / القاعدة Bioinformatics (2017)

Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation

بواسطة Touré, Vasundra, Le Novère, Nicolas, Waltemath, Dagmar, Wolkenhauer, Olaf
الحاوية / القاعدة PLoS Comput Biol (2018)

Annotation-based feature extraction from sets of SBML models

بواسطة Alm, Rebekka, Waltemath, Dagmar, Wolfien, Markus, Wolkenhauer, Olaf, Henkel, Ron
الحاوية / القاعدة J Biomed Semantics (2015)

Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a...

بواسطة Inau, Esther Thea, Sack, Jean, Waltemath, Dagmar, Zeleke, Atinkut Alamirrew
الحاوية / القاعدة JMIR Res Protoc (2021)

Ranked retrieval of Computational Biology models

بواسطة Henkel, Ron, Endler, Lukas, Peters, Andre, Le Novère, Nicolas, Waltemath, Dagmar
منشور في 2010

Notions of similarity for systems biology models

بواسطة Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
الحاوية / القاعدة Brief Bioinform (2016)

Notions of similarity for systems biology models

بواسطة Henkel, Ron, Hoehndorf, Robert, Kacprowski, Tim, Knüpfer, Christian, Liebermeister, Wolfram, Waltemath, Dagmar
الحاوية / القاعدة Brief Bioinform (2017)

Identifying frequent patterns in biochemical reaction networks: a workflow

بواسطة Lambusch, Fabienne, Waltemath, Dagmar, Wolkenhauer, Olaf, Sandkuhl, Kurt, Rosenke, Christian, Henkel, Ron
الحاوية / القاعدة Database (Oxford) (2018)

Open modeling and exchange (OMEX) metadata specification version 1.0

بواسطة Neal, Maxwell L., Gennari, John H., Waltemath, Dagmar, Nickerson, David P., König, Matthias
الحاوية / القاعدة J Integr Bioinform (2020)

Evolution of computational models in BioModels Database and the Physiome Model Repository

بواسطة Scharm, Martin, Gebhardt, Tom, Touré, Vasundra, Bagnacani, Andrea, Salehzadeh-Yazdi, Ali, Wolkenhauer, Olaf, Waltemath, Dagmar
الحاوية / القاعدة BMC Syst Biol (2018)

STON: exploring biological pathways using the SBGN standard and graph databases

بواسطة Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
الحاوية / القاعدة BMC Bioinformatics (2016)

Towards standardization guidelines for in silico approaches in personalized medicine

بواسطة Brunak, Søren, Bjerre Collin, Catherine, Eva Ó Cathaoir, Katharina, Golebiewski, Martin, Kirschner, Marc, Kockum, Ingrid, Moser, Heike, Waltemath, Dagmar
الحاوية / القاعدة J Integr Bioinform (2020)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

بواسطة Bergmann, Frank T., Cooper, Jonathan, König, Matthias, Moraru, Ion, Nickerson, David, Le Novère, Nicolas, Olivier, Brett G., Sahle, Sven, Smith, Lucian, Waltemath, Dagmar
الحاوية / القاعدة J Integr Bioinform (2018)

Specifications of Standards in Systems and Synthetic Biology

بواسطة Schreiber, Falk, Bader, Gary D., Golebiewski, Martin, Hucka, Michael, Kormeier, Benjamin, Le Novère, Nicolas, Myers, Chris, Nickerson, David, Sommer, Björn, Waltemath, Dagmar, Weise, Stephan
الحاوية / القاعدة J Integr Bioinform (2015)

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019

بواسطة Schreiber, Falk, Sommer, Björn, Bader, Gary D., Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
الحاوية / القاعدة J Integr Bioinform (2019)

Specifications of standards in systems and synthetic biology: status and developments in 2020

بواسطة Schreiber, Falk, Sommer, Björn, Czauderna, Tobias, Golebiewski, Martin, Gorochowski, Thomas E., Hucka, Michael, Keating, Sarah M., König, Matthias, Myers, Chris, Nickerson, David, Waltemath, Dagmar
الحاوية / القاعدة J Integr Bioinform (2020)