Enhancing Interpretability of Gene Signatures with Prior Biological Knowledge

Por Squillario, Margherita, Barbieri, Matteo, Verri, Alessandro, Barla, Annalisa
Publicado no Microarrays (Basel) (2016)

Genome instability model of metastatic neuroblastoma tumorigenesis by a dictionary learning algorithm

Por Masecchia, Salvatore, Coco, Simona, Barla, Annalisa, Verri, Alessandro, Tonini, Gian Paolo
Publicado no BMC Med Genomics (2015)

The l(1)-l(2 )regularization framework unmasks the hypoxia signature hidden in the transcriptome of a set of heterogeneous neuroblastoma cell lines

Por Fardin, Paolo, Barla, Annalisa, Mosci, Sofia, Rosasco, Lorenzo, Verri, Alessandro, Varesio, Luigi
Publicado em 2009

Knowledge Driven Variable Selection (KDVS) – a new approach to enrichment analysis of gene signatures obtained from high–throughput data

Por Zycinski, Grzegorz, Barla, Annalisa, Squillario, Margherita, Sanavia, Tiziana, Camillo, Barbara Di, Verri, Alessandro
Publicado em 2013

Identification of Multiple Hypoxia Signatures in Neuroblastoma Cell Lines by l(1)-l(2) Regularization and Data Reduction

Por Fardin, Paolo, Cornero, Andrea, Barla, Annalisa, Mosci, Sofia, Acquaviva, Massimo, Rosasco, Lorenzo, Gambini, Claudio, Verri, Alessandro, Varesio, Luigi
Publicado em 2010

The hidden information in patient-reported outcomes and clinician-assessed outcomes: multiple sclerosis as a proof of concept of a machine learning approach

Por Brichetto, Giampaolo, Monti Bragadin, Margherita, Fiorini, Samuele, Battaglia, Mario Alberto, Konrad, Giovanna, Ponzio, Michela, Pedullà, Ludovico, Verri, Alessandro, Barla, Annalisa, Tacchino, Andrea
Publicado no Neurol Sci (2019)

A biology-driven approach identifies the hypoxia gene signature as a predictor of the outcome of neuroblastoma patients

Por Fardin, Paolo, Barla, Annalisa, Mosci, Sofia, Rosasco, Lorenzo, Verri, Alessandro, Versteeg, Rogier, Caron, Huib N, Molenaar, Jan J, Øra, Ingrid, Eva, Alessandra, Puppo, Maura, Varesio, Luigi
Publicado em 2010

Molecular fingerprinting reflects different histotypes and brain region in low grade gliomas

Por Mascelli, Samantha, Barla, Annalisa, Raso, Alessandro, Mosci, Sofia, Nozza, Paolo, Biassoni, Roberto, Morana, Giovanni, Huber, Martin, Mircean, Cristian, Fasulo, Daniel, Noy, Karin, Wittemberg, Gayle, Pignatelli, Sara, Piatelli, Gianluca, Cama, Armando, Garré, Maria Luisa, Capra, Valeria, Verri, Alessandro
Publicado em 2013

Advances in dynamic modeling of colorectal cancer signaling-network regions, a path toward targeted therapies

Por Tortolina, Lorenzo, Duffy, David J., Maffei, Massimo, Castagnino, Nicoletta, Carmody, Aimée M., Kolch, Walter, Kholodenko, Boris N., Ambrosi, Cristina De, Barla, Annalisa, Biganzoli, Elia M., Nencioni, Alessio, Patrone, Franco, Ballestrero, Alberto, Zoppoli, Gabriele, Verri, Alessandro, Parodi, Silvio
Publicado no Oncotarget (2014)

Transplantation Induces Profound Changes in the Transcriptional Asset of Hematopoietic Stem Cells: Identification of Specific Signatures Using Machine Learning Techniques

Por Cilloni, Daniela, Petiti, Jessica, Campia, Valentina, Podestà, Marina, Squillario, Margherita, Montserrat, Nuria, Bertaina, Alice, Sabatini, Federica, Carturan, Sonia, Berger, Massimo, Saglio, Francesco, Bandini, Giuseppe, Bonifazi, Francesca, Fagioli, Franca, Moretta, Lorenzo, Saglio, Giuseppe, Verri, Alessandro, Barla, Annalisa, Locatelli, Franco, Frassoni, Francesco
Publicado no J Clin Med (2020)