Large synteny blocks revealed between Caenorhabditis elegans and Caenorhabditis briggsae genomes using OrthoCluster

מאת Vergara, Ismael A, Chen, Nansheng
יצא לאור 2010

CooVar: Co-occurring variant analyzer

מאת Vergara, Ismael A, Frech, Christian, Chen, Nansheng
יצא לאור 2012

Using the Generic Synteny Browser (GBrowse_syn)

מאת McKay, Sheldon J., Vergara, Ismael A., Stajich, Jason E.
יצא לאור 2010

StAR: a simple tool for the statistical comparison of ROC curves

מאת Vergara, Ismael A, Norambuena, Tomás, Ferrada, Evandro, Slater, Alex W, Melo, Francisco
יצא לאור 2008

Transcriptome-Wide Detection of Differentially Expressed Coding and Non-Coding Transcripts and Their Clinical Significance in Prostate Cancer

מאת Erho, Nicholas, Buerki, Christine, Triche, Timothy J., Davicioni, Elai, Vergara, Ismael A.
יצא לאור 2012

Identification of novel transcripts with differential dorso-ventral expression in Xenopus gastrula using serial analysis of gene expression

מאת Faunes, Fernando, Sánchez, Natalia, Castellanos, Javier, Vergara, Ismael A, Melo, Francisco, Larraín, Juan
יצא לאור 2009

OrthoClusterDB: an online platform for synteny blocks

מאת Ng, Man-Ping, Vergara, Ismael A, Frech, Christian, Chen, Qingkang, Zeng, Xinghuo, Pei, Jian, Chen, Nansheng
יצא לאור 2009

Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa

מאת Semenec, Lucie, Vergara, Ismael A., Laloo, Andrew E., Petrovski, Steve, Bond, Philip L., Franks, Ashley E.
הוצא לאור ב mBio (2020)

Quantitative Trait Locus (QTL) Mapping Reveals a Role for Unstudied Genes in Aspergillus Virulence

מאת Christians, Julian K., Cheema, Manjinder S., Vergara, Ismael A., Watt, Cortney A., Pinto, Linda J., Chen, Nansheng, Moore, Margo M.
יצא לאור 2011

Polymorphic segmental duplication in the nematode <it>Caenorhabditis elegans</it>

מאת Baillie David L, Johnsen Robert C, Tarailo-Graovac Maja, Huang Jim C, Mah Allan K, Vergara Ismael A, Chen Nansheng
יצא לאור 2009-07-01

Polymorphic segmental duplication in the nematode Caenorhabditis elegans

מאת Vergara, Ismael A, Mah, Allan K, Huang, Jim C, Tarailo-Graovac, Maja, Johnsen, Robert C, Baillie, David L, Chen, Nansheng
יצא לאור 2009

Genomic “Dark Matter” in Prostate Cancer: Exploring the Clinical Utility of ncRNA as Biomarkers

מאת Vergara, Ismael A., Erho, Nicholas, Triche, Timothy J., Ghadessi, Mercedeh, Crisan, Anamaria, Sierocinski, Thomas, Black, Peter C., Buerki, Christine, Davicioni, Elai
יצא לאור 2012

RNA-seq analysis of the C. briggsae transcriptome

מאת Uyar, Bora, Chu, Jeffrey S.C., Vergara, Ismael A., Chua, Shu Yi, Jones, Martin R., Wong, Tammy, Baillie, David L., Chen, Nansheng
יצא לאור 2012

Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans

מאת Vergara, Ismael A, Tarailo-Graovac, Maja, Frech, Christian, Wang, Jun, Qin, Zhaozhao, Zhang, Ting, She, Rong, Chu, Jeffrey SC, Wang, Ke, Chen, Nansheng
יצא לאור 2014

The lncRNAs PCGEM1 and PRNCR1 are not implicated in castration resistant prostate cancer

מאת Prensner, John R., Sahu, Anirban, Iyer, Matthew K., Malik, Rohit, Chandler, Benjamin, Asangani, Irfan A., Poliakov, Anton, Vergara, Ismael A., Alshalalfa, Mohammed, Jenkins, Robert B., Davicioni, Elai, Feng, Felix Y., Chinnaiyan, Arul M.
יצא לאור 2014

Discovery and Validation of Novel Expression Signature for Postcystectomy Recurrence in High-Risk Bladder Cancer

מאת Mitra, Anirban P., Lam, Lucia L., Ghadessi, Mercedeh, Erho, Nicholas, Vergara, Ismael A., Alshalalfa, Mohammed, Buerki, Christine, Haddad, Zaid, Sierocinski, Thomas, Triche, Timothy J., Skinner, Eila C., Davicioni, Elai, Daneshmand, Siamak, Black, Peter C.
הוצא לאור ב J Natl Cancer Inst (2014)

Metabolomic profiling identifies biochemical pathways associated with castrate resistant prostate cancer

מאת Kaushik, Akash K, Vareed, Shaiju K, Basu, Sumanta, Putluri, Vasanta, Putluri, Nagireddy, Panzitt, Katrin, Brennan, Christine A, Chinnaiyan, Arul M, Vergara, Ismael A., Erho, Nicholas, Weigel, Nancy L, Mitsiades, Nicholas, Shojaie, Ali, Palapattu, Ganesh, Michailidis, George, Sreekumar, Arun
יצא לאור 2013

Secreted protein, acidic and rich in cysteine-like 1 (SPARCL1) is down regulated in aggressive prostate cancers and is prognostic for poor clinical outcome

מאת Hurley, Paula J., Marchionni, Luigi, Simons, Brian W., Ross, Ashley E., Peskoe, Sarah B., Miller, Rebecca M., Erho, Nicholas, Vergara, Ismael A., Ghadessi, Mercedeh, Huang, Zhenhua, Gurel, Bora, Park, Ben Ho, Davicioni, Elai, Jenkins, Robert B., Platz, Elizabeth A., Berman, David M., Schaeffer, Edward M.
יצא לאור 2012

Discovery and Validation of a Prostate Cancer Genomic Classifier that Predicts Early Metastasis Following Radical Prostatectomy

מאת Erho, Nicholas, Crisan, Anamaria, Vergara, Ismael A., Mitra, Anirban P., Ghadessi, Mercedeh, Buerki, Christine, Bergstralh, Eric J., Kollmeyer, Thomas, Fink, Stephanie, Haddad, Zaid, Zimmermann, Benedikt, Sierocinski, Thomas, Ballman, Karla V., Triche, Timothy J., Black, Peter C., Karnes, R. Jeffrey, Klee, George, Davicioni, Elai, Jenkins, Robert B.
יצא לאור 2013

Androgen Regulated SPARCL1 in the Tumor Microenvironment Inhibits Metastatic Progression

מאת Hurley, Paula J., Hughes, Robert M., Simons, Brian W., Huang, Jessie, Miller, Rebecca M., Shinder, Brian, Haffner, Michael C., Esopi, David, Kimura, Yasunori, Jabbari, Javaneh, Ross, Ashley E., Erho, Nicholas, Vergara, Ismael A., Faraj, Sheila F., Davicioni, Elai, Netto, George J., Yegnasubramanian, Srinivasan, An, Steven S., Schaeffer, Edward M.
הוצא לאור ב Cancer Res (2015)