Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site

von Kondo, Jiro, Urzhumtsev, Alexandre, Westhof, Eric
Veröffentlicht 2006

On the use of logarithmic scales for analysis of diffraction data

von Urzhumtsev, Alexandre, Afonine, Pavel V., Adams, Paul D.
Veröffentlicht 2009

Advancing methods for biomolecular crystallography

von Read, Randy, Urzhumtsev, Alexandre G., Lunin, Vladimir Y.
Veröffentlicht c201

TLS from fundamentals to practice

von Urzhumtsev, Alexandre, Afonine, Pavel V., Adams, Paul D.
Veröffentlicht 2013

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation

von Afonine, Pavel V., Adams, Paul D., Urzhumtsev, Alexandre
Veröffentlicht in Acta Crystallogr D Struct Biol (2018)

Cluster analysis for phasing with molecular replacement: a feasibility study

von Buehler, Andreas, Urzhumtseva, Ludmila, Lunin, Vladimir Y., Urzhumtsev, Alexandre
Veröffentlicht 2009

Crystallographic model quality at a glance

von Urzhumtseva, Ludmila, Afonine, Pavel V., Adams, Paul D., Urzhumtsev, Alexandre
Veröffentlicht 2009

Programming new geometry restraints: parallelity of atomic groups

von Sobolev, Oleg V., Afonine, Pavel V., Adams, Paul D., Urzhumtsev, Alexandre
Veröffentlicht in J Appl Crystallogr (2015)

Implementation of the riding hydrogen model in CCTBX to support the next generation of X-ray and neutron joint refinement in Phenix

von Liebschner, Dorothee, Afonine, Pavel V., Urzhumtsev, Alexandre G., Adams, Paul D.
Veröffentlicht in Methods Enzymol (2020)

Automatic multiple-zone rigid-body refinement with a large convergence radius

von Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Urzhumtsev, Alexandre, Adams, Paul D.
Veröffentlicht 2009

Metrics for comparison of crystallographic maps

von Urzhumtsev, Alexandre, Afonine, Pavel V., Lunin, Vladimir Y., Terwilliger, Thomas C., Adams, Paul D.
Veröffentlicht 2014

From deep TLS validation to ensembles of atomic models built from elemental motions

von Urzhumtsev, Alexandre, Afonine, Pavel V., Van Benschoten, Andrew H., Fraser, James S., Adams, Paul D.
Veröffentlicht in Acta Crystallogr D Biol Crystallogr (2015)

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum

von Urzhumtsev, Alexandre, Afonine, Pavel V., Van Benschoten, Andrew H., Fraser, James S., Adams, Paul D.
Veröffentlicht in Acta Crystallogr D Struct Biol (2016)

On macromolecular refinement at subatomic resolution with interatomic scatterers

von Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Adams, Paul D., Lunin, Vladimir Y., Urzhumtsev, Alexandre
Veröffentlicht 2007

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

von Simonetti, Angelita, Marzi, Stefano, Fabbretti, Attilio, Hazemann, Isabelle, Jenner, Lasse, Urzhumtsev, Alexandre, Gualerzi, Claudio O., Klaholz, Bruno P.
Veröffentlicht 2013

Real-space refinement in PHENIX for cryo-EM and crystallography

von Afonine, Pavel V., Poon, Billy K., Read, Randy J., Sobolev, Oleg V., Terwilliger, Thomas C., Urzhumtsev, Alexandre, Adams, Paul D.
Veröffentlicht in Acta Crystallogr D Struct Biol (2018)

FEM: feature-enhanced map

von Afonine, Pavel V., Moriarty, Nigel W., Mustyakimov, Marat, Sobolev, Oleg V., Terwilliger, Thomas C., Turk, Dusan, Urzhumtsev, Alexandre, Adams, Paul D.
Veröffentlicht in Acta Crystallogr D Biol Crystallogr (2015)

New tools for the analysis and validation of cryo-EM maps and atomic models

von Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre
Veröffentlicht in Acta Crystallogr D Struct Biol (2018)

A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain

von von Castelmur, Eleonore, Marino, Marco, Svergun, Dmitri I., Kreplak, Laurent, Ucurum-Fotiadis, Zöhre, Konarev, Petr V., Urzhumtsev, Alexandre, Labeit, Dietmar, Labeit, Siegfried, Mayans, Olga
Veröffentlicht 2008

Aminoglycoside interactions and impacts on the eukaryotic ribosome

von Prokhorova, Irina, Altman, Roger B., Djumagulov, Muminjon, Shrestha, Jaya P., Urzhumtsev, Alexandre, Ferguson, Angelica, Chang, Cheng-Wei Tom, Yusupov, Marat, Blanchard, Scott C., Yusupova, Gulnara
Veröffentlicht in Proc Natl Acad Sci U S A (2017)