Crass: identification and reconstruction of CRISPR from unassembled metagenomic data

Por Skennerton, Connor T., Imelfort, Michael, Tyson, Gene W.
Publicado em 2013

The Bio-Community Perl toolkit for microbial ecology

Por Angly, Florent E., Fields, Christopher J., Tyson, Gene W.
Publicado em 2014

OrfM: a fast open reading frame predictor for metagenomic data

Por Woodcroft, Ben J., Boyd, Joel A., Tyson, Gene W.
Publicado no Bioinformatics (2016)

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes

Por Boyd, Joel A, Woodcroft, Ben J, Tyson, Gene W
Publicado no Nucleic Acids Res (2018)

Diverse populations of lake water bacteria exhibit chemotaxis towards inorganic nutrients

Por Dennis, Paul G, Seymour, Justin, Kumbun, Kimber, Tyson, Gene W
Publicado em 2013

Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters

Por Vanwonterghem, Inka, Jensen, Paul D., Rabaey, Korneel, Tyson, Gene W.
Publicado no Sci Rep (2015)

Insights into the Diversity of Eukaryotes in Acid Mine Drainage Biofilm Communities

Por Baker, Brett J., Tyson, Gene W., Goosherst, Lindsey, Banfield, Jillian F.
Publicado em 2009

STAMP: statistical analysis of taxonomic and functional profiles

Por Parks, Donovan H., Tyson, Gene W., Hugenholtz, Philip, Beiko, Robert G.
Publicado no Bioinformatics (2014)

Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma

Por Eppley, John M., Tyson, Gene W., Getz, Wayne M., Banfield, Jillian F.
Publicado em 2007

Strainer: software for analysis of population variation in community genomic datasets

Por Eppley, John M, Tyson, Gene W, Getz, Wayne M, Banfield, Jillian F
Publicado em 2007

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

Por Shi, Yanmei, Tyson, Gene W, Eppley, John M, DeLong, Edward F
Publicado em 2011

Grinder: a versatile amplicon and shotgun sequence simulator

Por Angly, Florent E., Willner, Dana, Rohwer, Forest, Hugenholtz, Philip, Tyson, Gene W.
Publicado em 2012

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Por Parks, Donovan H., Imelfort, Michael, Skennerton, Connor T., Hugenholtz, Philip, Tyson, Gene W.
Publicado no Genome Res (2015)

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data

Por Bragg, Lauren M., Stone, Glenn, Butler, Margaret K., Hugenholtz, Philip, Tyson, Gene W.
Publicado em 2013

Dynamics of Cathode-Associated Microbial Communities and Metabolite Profiles in a Glycerol-Fed Bioelectrochemical System

Por Dennis, Paul G., Harnisch, Falk, Yeoh, Yun Kit, Tyson, Gene W., Rabaey, Korneel
Publicado em 2013

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

Por Pantos, Olga, Bongaerts, Pim, Dennis, Paul G, Tyson, Gene W, Hoegh-Guldberg, Ove
Publicado no ISME J (2015)

Investigation of Candidate Division TM7, a Recently Recognized Major Lineage of the Domain Bacteria with No Known Pure-Culture Representatives

Por Hugenholtz, Philip, Tyson, Gene W., Webb, Richard I., Wagner, Ankia M., Blackall, Linda L.
Publicado em 2001

High-Throughput Amplicon Sequencing Reveals Distinct Communities within a Corroding Concrete Sewer System

Por Cayford, Barry I., Dennis, Paul G., Keller, Jurg, Tyson, Gene W., Bond, Philip L.
Publicado em 2012

GroopM: an automated tool for the recovery of population genomes from related metagenomes

Por Imelfort, Michael, Parks, Donovan, Woodcroft, Ben J., Dennis, Paul, Hugenholtz, Philip, Tyson, Gene W.
Publicado em 2014

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking

Por Sekiguchi, Yuji, Ohashi, Akiko, Parks, Donovan H., Yamauchi, Toshihiro, Tyson, Gene W., Hugenholtz, Philip
Publicado no PeerJ (2015)