Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks

door Dubitzky Werner, Mandel Johannes J, Swain Martin T
Gepubliceerd in 2010-09-01

Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks

door Swain, Martin T, Mandel, Johannes J, Dubitzky, Werner
Gepubliceerd in 2010

G-Anchor: a novel approach for whole-genome comparative mapping utilizing evolutionary conserved DNA sequences

door Lenis, Vasileios Panagiotis E, Swain, Martin, Larkin, Denis M
Gepubliceerd in Gigascience (2018)

Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages

door Almpanis, Apostolos, Swain, Martin, Gatherer, Derek, McEwan, Neil
Gepubliceerd in Microb Genom (2018)

Direct Sequencing of Cryptosporidium in Stool Samples for Public Health

door Morris, Arthur, Robinson, Guy, Swain, Martin T., Chalmers, Rachel M.
Gepubliceerd in Front Public Health (2019)

Identification and temporal expression of putative circadian clock transcripts in the amphipod crustacean Talitrus saltator

door O’Grady, Joseph F., Hoelters, Laura S., Swain, Martin T., Wilcockson, David C.
Gepubliceerd in PeerJ (2016)

Transcriptional changes when Myxococcus xanthus preys on Escherichia coli suggest myxobacterial predators are constitutively toxic but regulate their feeding

door Livingstone, Paul G., Millard, Andrew D., Swain, Martin T., Whitworth, David E.
Gepubliceerd in Microb Genom (2018)

Metaphylogenomic and Potential Functionality of the Limpet Patella pellucida’s Gastrointestinal Tract Microbiome

door Dudek, Magda, Adams, Jessica, Swain, Martin, Hegarty, Matthew, Huws, Sharon, Gallagher, Joe
Gepubliceerd in Int J Mol Sci (2014)

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

door Kara, Altan, Vickers, Martin, Swain, Martin, Whitworth, David E., Fernandez-Fuentes, Narcis
Gepubliceerd in BMC Bioinformatics (2015)

Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1

door Sengupta, Kriti, Swain, Martin T., Livingstone, Paul G., Whitworth, David E., Saha, Pradipta
Gepubliceerd in Front Microbiol (2019)

Genome-Wide Identification of Myxobacterial Predation Genes and Demonstration of Formaldehyde Secretion as a Potentially Predation-Resistant Trait of Pseudomonas aeruginosa

door Sutton, Daryn, Livingstone, Paul G., Furness, Eleanor, Swain, Martin T., Whitworth, David E.
Gepubliceerd in Front Microbiol (2019)

DISMISS: detection of stranded methylation in MeDIP-Seq data

door Niazi, Umar, Geyer, Kathrin K., Vickers, Martin J., Hoffmann, Karl F., Swain, Martin T.
Gepubliceerd in BMC Bioinformatics (2016)

Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas

door Oliphant, Andrew, Alexander, Jodi L., Swain, Martin T., Webster, Simon G., Wilcockson, David C.
Gepubliceerd in BMC Genomics (2018)

Mendel’s pea crosses: varieties, traits and statistics

door Ellis, T. H. Noel, Hofer, Julie M. I., Swain, Martin T., van Dijk, Peter J.
Gepubliceerd in Hereditas (2019)

Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins

door Hargreaves, Adam D., Swain, Martin T., Hegarty, Matthew J., Logan, Darren W., Mulley, John F.
Gepubliceerd in Genome Biol Evol (2014)

Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function

door Mulley, John F, Hargreaves, Adam D, Hegarty, Matthew J, Heller, R Scott, Swain, Martin T
Gepubliceerd in BMC Genomics (2014)

A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

door Swain, Martin T., Tsai, Isheng J., Assefa, Samual A., Newbold, Chris, Berriman, Matthew, Otto, Thomas D.
Gepubliceerd in 2012

Genotyping and Whole-Genome Resequencing of Welsh Sheep Breeds Reveal Candidate Genes and Variants for Adaptation to Local Environment and Socioeconomic Traits

door Sweet-Jones, James, Lenis, Vasileios Panagiotis, Yurchenko, Andrey A., Yudin, Nikolay S., Swain, Martin, Larkin, Denis M.
Gepubliceerd in Front Genet (2021)

Schistosoma comparative genomics: integrating genome structure, parasite biology and anthelmintic discovery

door Swain, Martin T., Larkin, Denis M., Caffrey, Conor R., Davies, Stephen J., Loukas, Alex, Skelly, Patrick J., Hoffmann, Karl F.
Gepubliceerd in 2011

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

door Mora-Ortiz, Marina, Swain, Martin T., Vickers, Martin J., Hegarty, Matthew J., Kelly, Rhys, Smith, Lydia M. J., Skøt, Leif
Gepubliceerd in BMC Genomics (2016)