Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks

Por Dubitzky Werner, Mandel Johannes J, Swain Martin T
Publicado em 2010-09-01

Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks

Por Swain, Martin T, Mandel, Johannes J, Dubitzky, Werner
Publicado em 2010

G-Anchor: a novel approach for whole-genome comparative mapping utilizing evolutionary conserved DNA sequences

Por Lenis, Vasileios Panagiotis E, Swain, Martin, Larkin, Denis M
Publicado no Gigascience (2018)

Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages

Por Almpanis, Apostolos, Swain, Martin, Gatherer, Derek, McEwan, Neil
Publicado no Microb Genom (2018)

Direct Sequencing of Cryptosporidium in Stool Samples for Public Health

Por Morris, Arthur, Robinson, Guy, Swain, Martin T., Chalmers, Rachel M.
Publicado no Front Public Health (2019)

Identification and temporal expression of putative circadian clock transcripts in the amphipod crustacean Talitrus saltator

Por O’Grady, Joseph F., Hoelters, Laura S., Swain, Martin T., Wilcockson, David C.
Publicado no PeerJ (2016)

Transcriptional changes when Myxococcus xanthus preys on Escherichia coli suggest myxobacterial predators are constitutively toxic but regulate their feeding

Por Livingstone, Paul G., Millard, Andrew D., Swain, Martin T., Whitworth, David E.
Publicado no Microb Genom (2018)

Metaphylogenomic and Potential Functionality of the Limpet Patella pellucida’s Gastrointestinal Tract Microbiome

Por Dudek, Magda, Adams, Jessica, Swain, Martin, Hegarty, Matthew, Huws, Sharon, Gallagher, Joe
Publicado no Int J Mol Sci (2014)

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor

Por Kara, Altan, Vickers, Martin, Swain, Martin, Whitworth, David E., Fernandez-Fuentes, Narcis
Publicado no BMC Bioinformatics (2015)

Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1

Por Sengupta, Kriti, Swain, Martin T., Livingstone, Paul G., Whitworth, David E., Saha, Pradipta
Publicado no Front Microbiol (2019)

Genome-Wide Identification of Myxobacterial Predation Genes and Demonstration of Formaldehyde Secretion as a Potentially Predation-Resistant Trait of Pseudomonas aeruginosa

Por Sutton, Daryn, Livingstone, Paul G., Furness, Eleanor, Swain, Martin T., Whitworth, David E.
Publicado no Front Microbiol (2019)

DISMISS: detection of stranded methylation in MeDIP-Seq data

Por Niazi, Umar, Geyer, Kathrin K., Vickers, Martin J., Hoffmann, Karl F., Swain, Martin T.
Publicado no BMC Bioinformatics (2016)

Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas

Por Oliphant, Andrew, Alexander, Jodi L., Swain, Martin T., Webster, Simon G., Wilcockson, David C.
Publicado no BMC Genomics (2018)

Mendel’s pea crosses: varieties, traits and statistics

Por Ellis, T. H. Noel, Hofer, Julie M. I., Swain, Martin T., van Dijk, Peter J.
Publicado no Hereditas (2019)

Restriction and Recruitment—Gene Duplication and the Origin and Evolution of Snake Venom Toxins

Por Hargreaves, Adam D., Swain, Martin T., Hegarty, Matthew J., Logan, Darren W., Mulley, John F.
Publicado no Genome Biol Evol (2014)

Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function

Por Mulley, John F, Hargreaves, Adam D, Hegarty, Matthew J, Heller, R Scott, Swain, Martin T
Publicado no BMC Genomics (2014)

A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

Por Swain, Martin T., Tsai, Isheng J., Assefa, Samual A., Newbold, Chris, Berriman, Matthew, Otto, Thomas D.
Publicado em 2012

Schistosoma comparative genomics: integrating genome structure, parasite biology and anthelmintic discovery

Por Swain, Martin T., Larkin, Denis M., Caffrey, Conor R., Davies, Stephen J., Loukas, Alex, Skelly, Patrick J., Hoffmann, Karl F.
Publicado em 2011

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

Por Mora-Ortiz, Marina, Swain, Martin T., Vickers, Martin J., Hegarty, Matthew J., Kelly, Rhys, Smith, Lydia M. J., Skøt, Leif
Publicado no BMC Genomics (2016)

The importance of extracellular vesicle purification for downstream analysis: A comparison of differential centrifugation and size exclusion chromatography for helminth pathogens

Por Davis, Chelsea N., Phillips, Helen, Tomes, John J., Swain, Martin T., Wilkinson, Toby J., Brophy, Peter M., Morphew, Russell M.
Publicado no PLoS Negl Trop Dis (2019)