KnotSeeker: Heuristic pseudoknot detection in long RNA sequences

Por Sperschneider, Jana, Datta, Amitava
Publicado em 2008

DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model

Por Sperschneider, Jana, Datta, Amitava
Publicado em 2010

Bioinformatics Problem solving paradigms /

Por Sperschneider, Volker., Sperschneider, Jana., Scheubert, Lena.
Publicado em 2008

Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins

Por Sperschneider, Jana, Datta, Amitava, Wise, Michael J.
Publicado em 2011

Predicting pseudoknotted structures across two RNA sequences

Por Sperschneider, Jana, Datta, Amitava, Wise, Michael J.
Publicado em 2012

Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8

Por Hane, James K., Anderson, Jonathan P., Williams, Angela H., Sperschneider, Jana, Singh, Karam B.
Publicado em 2014

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors

Por Sperschneider, Jana, Williams, Angela H., Hane, James K., Singh, Karam B., Taylor, Jennifer M.
Publicado no Front Plant Sci (2015)

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

Por Sperschneider, Jana, Gardiner, Donald M, Taylor, Jennifer M, Hane, James K, Singh, Karam B, Manners, John M
Publicado em 2013

Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi

Por Sperschneider, Jana, Dodds, Peter N., Gardiner, Donald M., Manners, John M., Singh, Karam B., Taylor, Jennifer M.
Publicado no PLoS Pathog (2015)

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity

Por Sperschneider, Jana, Gardiner, Donald M., Thatcher, Louise F., Lyons, Rebecca, Singh, Karam B., Manners, John M., Taylor, Jennifer M.
Publicado no Genome Biol Evol (2015)

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

Por Anderson, Jonathan P., Sperschneider, Jana, Win, Joe, Kidd, Brendan, Yoshida, Kentaro, Hane, James, Saunders, Diane G. O., Singh, Karam B.
Publicado no Sci Rep (2017)

Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici

Por Figueroa, Melania, Upadhyaya, Narayana M., Sperschneider, Jana, Park, Robert F., Szabo, Les J., Steffenson, Brian, Ellis, Jeff G., Dodds, Peter N.
Publicado no Front Plant Sci (2016)

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

Por Sperschneider, Jana, Ying, Hua, Dodds, Peter N., Gardiner, Donald M., Upadhyaya, Narayana M., Singh, Karam B., Manners, John M., Taylor, Jennifer M.
Publicado em 2014

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

Por Sperschneider, Jana, Catanzariti, Ann-Maree, DeBoer, Kathleen, Petre, Benjamin, Gardiner, Donald M., Singh, Karam B., Dodds, Peter N., Taylor, Jennifer M.
Publicado no Sci Rep (2017)

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity

Por Schwessinger, Benjamin, Sperschneider, Jana, Cuddy, William S., Garnica, Diana P., Miller, Marisa E., Taylor, Jennifer M., Dodds, Peter N., Figueroa, Melania, Park, Robert F., Rathjen, John P.
Publicado no mBio (2018)

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes

Por Upadhyaya, Narayana M., Garnica, Diana P., Karaoglu, Haydar, Sperschneider, Jana, Nemri, Adnane, Xu, Bo, Mago, Rohit, Cuomo, Christina A., Rathjen, John P., Park, Robert F., Ellis, Jeffrey G., Dodds, Peter N.
Publicado no Front Plant Sci (2015)

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust

Por Miller, Marisa E., Zhang, Ying, Omidvar, Vahid, Sperschneider, Jana, Schwessinger, Benjamin, Raley, Castle, Palmer, Jonathan M., Garnica, Diana, Upadhyaya, Narayana, Rathjen, John, Taylor, Jennifer M., Park, Robert F., Dodds, Peter N., Hirsch, Cory D., Kianian, Shahryar F., Figueroa, Melania
Publicado no mBio (2018)

Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors...

Por Williams, Angela H., Sharma, Mamta, Thatcher, Louise F., Azam, Sarwar, Hane, James K., Sperschneider, Jana, Kidd, Brendan N., Anderson, Jonathan P., Ghosh, Raju, Garg, Gagan, Lichtenzveig, Judith, Kistler, H. Corby, Shea, Terrance, Young, Sarah, Buck, Sally-Anne G., Kamphuis, Lars G., Saxena, Rachit, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev K., Singh, Karam B.
Publicado no BMC Genomics (2016)