genozip: a fast and efficient compression tool for VCF files

od Lan, Divon, Tobler, Raymond, Souilmi, Yassine, Llamas, Bastien
izdano v Bioinformatics (2020)

Highlights of the first ISCB Student Council Symposium in Africa 2015

od Souilmi, Yassine, Allali, Imane, Badad, Oussama, Dwibedi, Chinmay Kumar
izdano v F1000Res (2015)

Ancient DNA Studies in Pre-Columbian Mesoamerica

od Roca-Rada, Xavier, Souilmi, Yassine, Teixeira, João C., Llamas, Bastien
izdano v Genes (Basel) (2020)

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants

od Elshazly, Hatem, Souilmi, Yassine, Tonellato, Peter J., Wall, Dennis P., Abouelhoda, Mohamed
izdano v BMC Bioinformatics (2017)

COSMOS: cloud enabled NGS analysis

od Souilmi, Yassine, Jung, Jae-Yoon, Lancaster, Alex, Gafni, Erik, Amzazi, Saaid, Ghazal, Hassan, Wall, Dennis, Tonellato, Peter
izdano v BMC Bioinformatics (2015)

COSMOS: Python library for massively parallel workflows

od Gafni, Erik, Luquette, Lovelace J., Lancaster, Alex K., Hawkins, Jared B., Jung, Jae-Yoon, Souilmi, Yassine, Wall, Dennis P., Tonellato, Peter J.
Izdano 2014

Scalable and cost-effective NGS genotyping in the cloud

od Souilmi, Yassine, Lancaster, Alex K., Jung, Jae-Yoon, Rizzo, Ettore, Hawkins, Jared B., Powles, Ryan, Amzazi, Saaïd, Ghazal, Hassan, Tonellato, Peter J., Wall, Dennis P.
izdano v BMC Med Genomics (2015)

An ancient viral epidemic involving host coronavirus interacting genes more than 20,000 years ago in East Asia

od Souilmi, Yassine, Lauterbur, M. Elise, Tobler, Ray, Huber, Christian D., Johar, Angad S., Moradi, Shayli Varasteh, Johnston, Wayne A., Krogan, Nevan J., Alexandrov, Kirill, Enard, David
izdano v Curr Biol (2021)

Ancient mitochondrial genomes from the Argentinian Pampas inform the early peopling of the Southern Cone of South America

od Roca-Rada, Xavier, Politis, Gustavo, Messineo, Pablo G., Scheifler, Nahuel, Scabuzzo, Clara, González, Mariela, Harkins, Kelly M., Reich, David, Souilmi, Yassine, Teixeira, João C., Llamas, Bastien, Fehren-Schmitz, Lars
izdano v iScience (2021)

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

od Ahmed, Azza E., Mpangase, Phelelani T., Panji, Sumir, Baichoo, Shakuntala, Souilmi, Yassine, Fadlelmola, Faisal M., Alghali, Mustafa, Aron, Shaun, Bendou, Hocine, De Beste, Eugene, Mbiyavanga, Mamana, Souiai, Oussema, Yi, Long, Zermeno, Jennie, Armstrong, Don, O'Connor, Brian D., Mainzer, Liudmila Sergeevna, Crusoe, Michael R., Meintjes, Ayton, Van Heusden, Peter, Botha, Gerrit, Joubert, Fourie, Jongeneel, C. Victor, Hazelhurst, Scott, Mulder, Nicola
izdano v AAS Open Res (2019)

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

od Baichoo, Shakuntala, Souilmi, Yassine, Panji, Sumir, Botha, Gerrit, Meintjes, Ayton, Hazelhurst, Scott, Bendou, Hocine, Beste, Eugene de, Mpangase, Phelelani T., Souiai, Oussema, Alghali, Mustafa, Yi, Long, O’Connor, Brian D., Crusoe, Michael, Armstrong, Don, Aron, Shaun, Joubert, Fourie, Ahmed, Azza E., Mbiyavanga, Mamana, Heusden, Peter van, Magosi, Lerato E., Zermeno, Jennie, Mainzer, Liudmila Sergeevna, Fadlelmola, Faisal M., Jongeneel, C. Victor, Mulder, Nicola
izdano v BMC Bioinformatics (2018)

Equitable Expanded Carrier Screening Needs Indigenous Clinical and Population Genomic Data

od Easteal, Simon, Arkell, Ruth M., Balboa, Renzo F., Bellingham, Shayne A., Brown, Alex D., Calma, Tom, Cook, Matthew C., Davis, Megan, Dawkins, Hugh J.S., Dinger, Marcel E., Dobbie, Michael S., Farlow, Ashley, Gwynne, Kylie G., Hermes, Azure, Hoy, Wendy E., Jenkins, Misty R., Jiang, Simon H., Kaplan, Warren, Leslie, Stephen, Llamas, Bastien, Mann, Graham J., McMorran, Brendan J., McWhirter, Rebekah E., Meldrum, Cliff J., Nagaraj, Shivashankar H., Newman, Saul J., Nunn, Jack S., Ormond-Parker, Lyndon, Orr, Neil J., Paliwal, Devashi, Patel, Hardip R., Pearson, Glenn, Pratt, Greg R., Rambaldini, Boe, Russell, Lynette W., Savarirayan, Ravi, Silcocks, Matthew, Skinner, John C., Souilmi, Yassine, Vinuesa, Carola G., Baynam, Gareth
izdano v Am J Hum Genet (2020)