genozip: a fast and efficient compression tool for VCF files

di Lan, Divon, Tobler, Raymond, Souilmi, Yassine, Llamas, Bastien
Pubblicato in Bioinformatics (2020)

Highlights of the first ISCB Student Council Symposium in Africa 2015

di Souilmi, Yassine, Allali, Imane, Badad, Oussama, Dwibedi, Chinmay Kumar
Pubblicato in F1000Res (2015)

Ancient DNA Studies in Pre-Columbian Mesoamerica

di Roca-Rada, Xavier, Souilmi, Yassine, Teixeira, João C., Llamas, Bastien
Pubblicato in Genes (Basel) (2020)

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants

di Elshazly, Hatem, Souilmi, Yassine, Tonellato, Peter J., Wall, Dennis P., Abouelhoda, Mohamed
Pubblicato in BMC Bioinformatics (2017)

COSMOS: cloud enabled NGS analysis

di Souilmi, Yassine, Jung, Jae-Yoon, Lancaster, Alex, Gafni, Erik, Amzazi, Saaid, Ghazal, Hassan, Wall, Dennis, Tonellato, Peter
Pubblicato in BMC Bioinformatics (2015)

COSMOS: Python library for massively parallel workflows

di Gafni, Erik, Luquette, Lovelace J., Lancaster, Alex K., Hawkins, Jared B., Jung, Jae-Yoon, Souilmi, Yassine, Wall, Dennis P., Tonellato, Peter J.
Pubblicazione 2014

Scalable and cost-effective NGS genotyping in the cloud

di Souilmi, Yassine, Lancaster, Alex K., Jung, Jae-Yoon, Rizzo, Ettore, Hawkins, Jared B., Powles, Ryan, Amzazi, Saaïd, Ghazal, Hassan, Tonellato, Peter J., Wall, Dennis P.
Pubblicato in BMC Med Genomics (2015)

An ancient viral epidemic involving host coronavirus interacting genes more than 20,000 years ago in East Asia

di Souilmi, Yassine, Lauterbur, M. Elise, Tobler, Ray, Huber, Christian D., Johar, Angad S., Moradi, Shayli Varasteh, Johnston, Wayne A., Krogan, Nevan J., Alexandrov, Kirill, Enard, David
Pubblicato in Curr Biol (2021)

Ancient mitochondrial genomes from the Argentinian Pampas inform the early peopling of the Southern Cone of South America

di Roca-Rada, Xavier, Politis, Gustavo, Messineo, Pablo G., Scheifler, Nahuel, Scabuzzo, Clara, González, Mariela, Harkins, Kelly M., Reich, David, Souilmi, Yassine, Teixeira, João C., Llamas, Bastien, Fehren-Schmitz, Lars
Pubblicato in iScience (2021)

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

di Ahmed, Azza E., Mpangase, Phelelani T., Panji, Sumir, Baichoo, Shakuntala, Souilmi, Yassine, Fadlelmola, Faisal M., Alghali, Mustafa, Aron, Shaun, Bendou, Hocine, De Beste, Eugene, Mbiyavanga, Mamana, Souiai, Oussema, Yi, Long, Zermeno, Jennie, Armstrong, Don, O'Connor, Brian D., Mainzer, Liudmila Sergeevna, Crusoe, Michael R., Meintjes, Ayton, Van Heusden, Peter, Botha, Gerrit, Joubert, Fourie, Jongeneel, C. Victor, Hazelhurst, Scott, Mulder, Nicola
Pubblicato in AAS Open Res (2019)

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

di Baichoo, Shakuntala, Souilmi, Yassine, Panji, Sumir, Botha, Gerrit, Meintjes, Ayton, Hazelhurst, Scott, Bendou, Hocine, Beste, Eugene de, Mpangase, Phelelani T., Souiai, Oussema, Alghali, Mustafa, Yi, Long, O’Connor, Brian D., Crusoe, Michael, Armstrong, Don, Aron, Shaun, Joubert, Fourie, Ahmed, Azza E., Mbiyavanga, Mamana, Heusden, Peter van, Magosi, Lerato E., Zermeno, Jennie, Mainzer, Liudmila Sergeevna, Fadlelmola, Faisal M., Jongeneel, C. Victor, Mulder, Nicola
Pubblicato in BMC Bioinformatics (2018)

Equitable Expanded Carrier Screening Needs Indigenous Clinical and Population Genomic Data

di Easteal, Simon, Arkell, Ruth M., Balboa, Renzo F., Bellingham, Shayne A., Brown, Alex D., Calma, Tom, Cook, Matthew C., Davis, Megan, Dawkins, Hugh J.S., Dinger, Marcel E., Dobbie, Michael S., Farlow, Ashley, Gwynne, Kylie G., Hermes, Azure, Hoy, Wendy E., Jenkins, Misty R., Jiang, Simon H., Kaplan, Warren, Leslie, Stephen, Llamas, Bastien, Mann, Graham J., McMorran, Brendan J., McWhirter, Rebekah E., Meldrum, Cliff J., Nagaraj, Shivashankar H., Newman, Saul J., Nunn, Jack S., Ormond-Parker, Lyndon, Orr, Neil J., Paliwal, Devashi, Patel, Hardip R., Pearson, Glenn, Pratt, Greg R., Rambaldini, Boe, Russell, Lynette W., Savarirayan, Ravi, Silcocks, Matthew, Skinner, John C., Souilmi, Yassine, Vinuesa, Carola G., Baynam, Gareth
Pubblicato in Am J Hum Genet (2020)