Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics

por Abunimer, Ayman, Smith, Krista, Wu, Tsung-Jung, Lam, Phuc, Simonyan, Vahan, Mazumder, Raja
Publicado 2014

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)

por Wu, Tsung-Jung, Shamsaddini, Amirhossein, Pan, Yang, Smith, Krista, Crichton, Daniel J., Simonyan, Vahan, Mazumder, Raja
Publicado 2014

Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing

por Hora, Bhavna, Gulzar, Naila, Chen, Yue, Karagiannis, Konstantinos, Cai, Fangping, Su, Chang, Smith, Krista, Simonyan, Vahan, Shah, Sharaf Ali, Ahmed, Manzoor, Sanchez, Ana M., Stone, Mars, Cohen, Myron S., Denny, Thomas N., Mazumder, Raja, Gao, Feng
Publicado en mSphere (2020)

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis

por Wu, Tsung-Jung, Schriml, Lynn M., Chen, Qing-Rong, Colbert, Maureen, Crichton, Daniel J., Finney, Richard, Hu, Ying, Kibbe, Warren A., Kincaid, Heather, Meerzaman, Daoud, Mitraka, Elvira, Pan, Yang, Smith, Krista M., Srivastava, Sudhir, Ward, Sari, Yan, Cheng, Mazumder, Raja
Publicado en Database (Oxford) (2015)

Baseline human gut microbiota profile in healthy people and standard reporting template

por King, Charles H., Desai, Hiral, Sylvetsky, Allison C., LoTempio, Jonathan, Ayanyan, Shant, Carrie, Jill, Crandall, Keith A., Fochtman, Brian C., Gasparyan, Lusine, Gulzar, Naila, Howell, Paul, Issa, Najy, Krampis, Konstantinos, Mishra, Lopa, Morizono, Hiroki, Pisegna, Joseph R., Rao, Shuyun, Ren, Yao, Simonyan, Vahan, Smith, Krista, VedBrat, Sharanjit, Yao, Michael D., Mazumder, Raja
Publicado en PLoS One (2019)

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis

por Simonyan, Vahan, Chumakov, Konstantin, Dingerdissen, Hayley, Faison, William, Goldweber, Scott, Golikov, Anton, Gulzar, Naila, Karagiannis, Konstantinos, Vinh Nguyen Lam, Phuc, Maudru, Thomas, Muravitskaja, Olesja, Osipova, Ekaterina, Pan, Yang, Pschenichnov, Alexey, Rostovtsev, Alexandre, Santana-Quintero, Luis, Smith, Krista, Thompson, Elaine E., Tkachenko, Valery, Torcivia-Rodriguez, John, Voskanian, Alin, Wan, Quan, Wang, Jing, Wu, Tsung-Jung, Wilson, Carolyn, Mazumder, Raja
Publicado en Database (Oxford) (2016)

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

por Alterovitz, Gil, Dean, Dennis, Goble, Carole, Crusoe, Michael R., Soiland-Reyes, Stian, Bell, Amanda, Hayes, Anais, Suresh, Anita, Purkayastha, Anjan, King, Charles H., Taylor, Dan, Johanson, Elaine, Thompson, Elaine E., Donaldson, Eric, Morizono, Hiroki, Tsang, Hsinyi, Vora, Jeet K., Goecks, Jeremy, Yao, Jianchao, Almeida, Jonas S., Keeney, Jonathon, Addepalli, KanakaDurga, Krampis, Konstantinos, Smith, Krista M., Guo, Lydia, Walderhaug, Mark, Schito, Marco, Ezewudo, Matthew, Guimera, Nuria, Walsh, Paul, Kahsay, Robel, Gottipati, Srikanth, Rodwell, Timothy C., Bloom, Toby, Lai, Yuching, Simonyan, Vahan, Mazumder, Raja
Publicado en PLoS Biol (2018)