Lambda: the local aligner for massive biological data

by Hauswedell, Hannes, Singer, Jochen, Reinert, Knut
Published 2014

Single-cell mutation identification via phylogenetic inference

by Singer, Jochen, Kuipers, Jack, Jahn, Katharina, Beerenwinkel, Niko
Published in Nat Commun (2018)

Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers

by Hofmann, Ariane L., Behr, Jonas, Singer, Jochen, Kuipers, Jack, Beisel, Christian, Schraml, Peter, Moch, Holger, Beerenwinkel, Niko
Published in BMC Bioinformatics (2017)

The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System

by Rybak, Jürgen, Kuß, Anja, Lamecker, Hans, Zachow, Stefan, Hege, Hans-Christian, Lienhard, Matthias, Singer, Jochen, Neubert, Kerstin, Menzel, Randolf
Published 2010

Bioinformatics for precision oncology

by Singer, Jochen, Irmisch, Anja, Ruscheweyh, Hans-Joachim, Singer, Franziska, Toussaint, Nora C, Levesque, Mitchell P, Stekhoven, Daniel J, Beerenwinkel, Niko
Published in Brief Bioinform (2017)

Spatial Distribution of Private Gene Mutations in Clear Cell Renal Cell Carcinoma

by Moore, Ariane L., Batavia, Aashil A., Kuipers, Jack, Singer, Jochen, Burcklen, Elodie, Schraml, Peter, Beisel, Christian, Moch, Holger, Beerenwinkel, Niko
Published in Cancers (Basel) (2021)

SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics

by Singer, Franziska, Irmisch, Anja, Toussaint, Nora C., Grob, Linda, Singer, Jochen, Thurnherr, Thomas, Beerenwinkel, Niko, Levesque, Mitchell P., Dummer, Reinhard, Quagliata, Luca, Rothschild, Sacha I., Wicki, Andreas, Beisel, Christian, Stekhoven, Daniel J.
Published in BMC Med Inform Decis Mak (2018)

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis

by Singer, Jochen, Ruscheweyh, Hans-Joachim, Hofmann, Ariane L, Thurnherr, Thomas, Singer, Franziska, Toussaint, Nora C, Ng, Charlotte K Y, Piscuoglio, Salvatore, Beisel, Christian, Christofori, Gerhard, Dummer, Reinhard, Hall, Michael N, Krek, Wilhelm, Levesque, Mitchell P, Manz, Markus G, Moch, Holger, Papassotiropoulos, Andreas, Stekhoven, Daniel J, Wild, Peter, Wüst, Thomas, Rinn, Bernd, Beerenwinkel, Niko
Published in Bioinformatics (2018)