The Peculiarities of Large Intron Splicing in Animals

Por Shepard, Samuel, McCreary, Mark, Fedorov, Alexei
Publicado em 2009

Exploiting mid-range DNA patterns for sequence classification: binary abstraction Markov models

Por Shepard, Samuel S., McSweeny, Andrew, Serpen, Gursel, Fedorov, Alexei
Publicado em 2012

Critical association of ncRNA with introns

Por Rearick, David, Prakash, Ashwin, McSweeny, Andrew, Shepard, Samuel S., Fedorova, Larisa, Fedorov, Alexei
Publicado em 2011

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

Por Shepard, Samuel S., Meno, Sarah, Bahl, Justin, Wilson, Malania M., Barnes, John, Neuhaus, Elizabeth
Publicado no BMC Genomics (2016)

Erratum to: Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

Por Shepard, Samuel S., Meno, Sarah, Bahl, Justin, Wilson, Malania M., Barnes, John, Neuhaus, Elizabeth
Publicado no BMC Genomics (2016)

LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Por Shepard, Samuel S., Davis, C. Todd, Bahl, Justin, Rivailler, Pierre, York, Ian A., Donis, Ruben O.
Publicado em 2014

Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures

Por Bechtel, Jason M, Wittenschlaeger, Thomas, Dwyer, Trisha, Song, Jun, Arunachalam, Sasi, Ramakrishnan, Sadeesh K, Shepard, Samuel, Fedorov, Alexei
Publicado em 2008

Evolution of genomic sequence inhomogeneity at mid-range scales

Por Prakash, Ashwin, Shepard, Samuel S, He, Jie, Hart, Benjamin, Chen, Miao, Amarachintha, Surya P, Mileyeva-Biebesheimer, Olga, Bechtel, Jason, Fedorov, Alexei
Publicado em 2009

Structural and Antigenic Variation among Diverse Clade 2 H5N1 Viruses

Por Shore, David A., Yang, Hua, Balish, Amanda L., Shepard, Samuel S., Carney, Paul J., Chang, Jessie C., Davis, Charles T., Donis, Ruben O., Villanueva, Julie M., Klimov, Alexander I., Stevens, James
Publicado em 2013

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors

Por Whitmer, Shannon L.M., Ladner, Jason T., Wiley, Michael R., Patel, Ketan, Dudas, Gytis, Rambaut, Andrew, Sahr, Foday, Prieto, Karla, Shepard, Samuel S., Carmody, Ellie, Knust, Barbara, Naidoo, Dhamari, Deen, Gibrilla, Formenty, Pierre, Nichol, Stuart T., Palacios, Gustavo, Ströher, Ute
Publicado no Cell Rep (2018)

Shifting Clade Distribution, Reassortment, and Emergence of New Subtypes of Highly Pathogenic Avian Influenza A(H5) Viruses Collected from Vietnamese Poultry from 2012 to 2015

Por Nguyen, Diep T., Jang, Yunho, Nguyen, Tho D., Jones, Joyce, Shepard, Samuel S., Yang, Hua, Gerloff, Nancy, Fabrizio, Thomas, Nguyen, Long V., Inui, Ken, Yang, Genyan, Creanga, Adrian, Wang, Li, Mai, Duong T., Thor, Sharmi, Stevens, James, To, Thanh L., Wentworth, David E., Nguyen, Tung, Pham, Dong V., Bryant, Juliet E., Davis, C. Todd
Publicado no J Virol (2017)

Improving pandemic influenza risk assessment

Por Russell, Colin A, Kasson, Peter M, Donis, Ruben O, Riley, Steven, Dunbar, John, Rambaut, Andrew, Asher, Jason, Burke, Stephen, Davis, C Todd, Garten, Rebecca J, Gnanakaran, Sandrasegaram, Hay, Simon I, Herfst, Sander, Lewis, Nicola S, Lloyd-Smith, James O, Macken, Catherine A, Maurer-Stroh, Sebastian, Neuhaus, Elizabeth, Parrish, Colin R, Pepin, Kim M, Shepard, Samuel S, Smith, David L, Suarez, David L, Trock, Susan C, Widdowson, Marc-Alain, George, Dylan B, Lipsitch, Marc, Bloom, Jesse D
Publicado em 2014