Muller “Elements” in Drosophila: How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics

by Schaeffer, Stephen W.
Published in Genetics (2018)

Nucleotide Sequence of the Adh Gene Region of Drosophila pseudoobscura: Evolutionary Change and Evidence for an Ancient Gene Duplication

by Schaeffer, Stephen W., Aquadro, Charles F.
Published 1987

Mechanisms of Genetic Exchange Within the Chromosomal Inversions of Drosophila pseudoobscura

by Schaeffer, Stephen W., Anderson, Wyatt W.
Published 2005

Meiotic Transmission of Drosophila pseudoobscura Chromosomal Arrangements

by Meisel, Richard P., Schaeffer, Stephen W.
Published 2007

Molecular Population Genetics of Inversion Breakpoint Regions in Drosophila pseudoobscura

by Wallace, Andre G., Detweiler, Don, Schaeffer, Stephen W.
Published 2013

Species Distribution and Population Connectivity of Deep-Sea Mussels at Hydrocarbon Seeps in the Gulf of Mexico

by Faure, Baptiste, Schaeffer, Stephen W., Fisher, Charles R.
Published in PLoS One (2015)

Rec-DCM-Eigen: Reconstructing a Less Parsimonious but More Accurate Tree in Shorter Time

by Kang, Seunghwa, Tang, Jijun, Schaeffer, Stephen W., Bader, David A.
Published 2011

Investigation of population structure in Gulf of Mexico Seepiophila jonesi (Polychaeta, Siboglinidae) using cross-amplified microsatellite loci

by Huang, Chunya, Schaeffer, Stephen W., Fisher, Charles R., Cowart, Dominique A.
Published in PeerJ (2016)

Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura

by Fuller, Zachary L., Haynes, Gwilym D., Richards, Stephen, Schaeffer, Stephen W.
Published in Genetics (2016)

How chromosomal rearrangements shape adaptation and speciation: Case studies in Drosophila pseudoobscura and its sibling species D. persimilis

by Fuller, Zachary L., Koury, Spencer A., Phadnis, Nitin, Schaeffer, Stephen W.
Published in Mol Ecol (2018)

Divergence Between the Drosophila pseudoobscura and D. persimilis Genome Sequences in Relation to Chromosomal Inversions

by Noor, Mohamed A. F., Garfield, David A., Schaeffer, Stephen W., Machado, Carlos A.
Published 2007

Adaptive Evolution of Genes Duplicated from the Drosophila pseudoobscura neo-X Chromosome

by Meisel, Richard P., Hilldorfer, Benedict B., Koch, Jessica L., Lockton, Steven, Schaeffer, Stephen W.
Published 2010

Ancestral polymorphisms explain the role of chromosomal inversions in speciation

by Fuller, Zachary L., Leonard, Christopher J., Young, Randee E., Schaeffer, Stephen W., Phadnis, Nitin
Published in PLoS Genet (2018)

Selective forces acting during multi-domain protein evolution: the case of multi-domain globins

by Projecto-Garcia, Joana, Jollivet, Didier, Mary, Jean, Lallier, François H, Schaeffer, Stephen W, Hourdez, Stéphane
Published in Springerplus (2015)

Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes

by Bhutkar, Arjun, Schaeffer, Stephen W., Russo, Susan M., Xu, Mu, Smith, Temple F., Gelbart, William M.
Published 2008

Sulfide binding is mediated by zinc ions discovered in the crystal structure of a hydrothermal vent tubeworm hemoglobin

by Flores, Jason F., Fisher, Charles R., Carney, Susan L., Green, Brian N., Freytag, John K., Schaeffer, Stephen W., Royer, William E.
Published 2005

Extensive Recombination Suppression and Epistatic Selection Causes Chromosome-Wide Differentiation of a Selfish Sex Chromosome in Drosophila pseudoobscura

by Fuller, Zachary L., Koury, Spencer A., Leonard, Christopher J., Young, Randee E., Ikegami, Kobe, Westlake, Jonathan, Richards, Stephen, Schaeffer, Stephen W., Phadnis, Nitin
Published in Genetics (2020)

Evolutionary genomics of inversions in Drosophila pseudoobscura: Evidence for epistasis

by Schaeffer, Stephen W., Goetting-Minesky, M. Paula, Kovacevic, Miro, Peoples, John R., Graybill, Jennifer L., Miller, Jonathan M., Kim, Kyungsun, Nelson, Julie G., Anderson, Wyatt W.
Published 2003

Evidence for Stabilizing Selection on Codon Usage in Chromosomal Rearrangements of Drosophila pseudoobscura

by Fuller, Zachary L., Haynes, Gwilym D., Zhu, Dianhui, Batterton, Matthew, Chao, Hsu, Dugan, Shannon, Javaid, Mehwish, Jayaseelan, Joy C., Lee, Sandra, Li, Mingmei, Ongeri, Fiona, Qi, Sulan, Han, Yi, Doddapaneni, Harshavardhan, Richards, Stephen, Schaeffer, Stephen W.
Published in G3 (Bethesda) (2014)

Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila

by Machado, Heather E, Bergland, Alan O, Taylor, Ryan, Tilk, Susanne, Behrman, Emily, Dyer, Kelly, Fabian, Daniel K, Flatt, Thomas, González, Josefa, Karasov, Talia L, Kim, Bernard, Kozeretska, Iryna, Lazzaro, Brian P, Merritt, Thomas JS, Pool, John E, O'Brien, Katherine, Rajpurohit, Subhash, Roy, Paula R, Schaeffer, Stephen W, Serga, Svitlana, Schmidt, Paul, Petrov, Dmitri A
Published in eLife (2021)