Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota

por Cooper, Philip, Walker, Alan W., Reyes, Jorge, Chico, Martha, Salter, Susannah J., Vaca, Maritza, Parkhill, Julian
Publicado 2013

Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System

por Eutsey, Rory A., Powell, Evan, Dordel, Janina, Salter, Susannah J., Clark, Tyson A., Korlach, Jonas, Ehrlich, Garth D., Hiller, N. Luisa
Publicado en mBio (2015)

A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children

por Salter, Susannah J., Turner, Claudia, Watthanaworawit, Wanitda, de Goffau, Marcus C., Wagner, Josef, Parkhill, Julian, Bentley, Stephen D., Goldblatt, David, Nosten, Francois, Turner, Paul
Publicado en PLoS Negl Trop Dis (2017)

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination

por Mostowy, Rafał J., Croucher, Nicholas J., De Maio, Nicola, Chewapreecha, Claire, Salter, Susannah J., Turner, Paul, Aanensen, David M., Bentley, Stephen D., Didelot, Xavier, Fraser, Christophe
Publicado en Mol Biol Evol (2017)

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

por Salter, Susannah J, Cox, Michael J, Turek, Elena M, Calus, Szymon T, Cookson, William O, Moffatt, Miriam F, Turner, Paul, Parkhill, Julian, Loman, Nicholas J, Walker, Alan W
Publicado en BMC Biol (2014)

'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs

por Salter, Susannah J., Scott, Paul, Page, Andrew J., Tracey, Alan, de Goffau, Marcus C., Cormie, Claire, Ochoa-Montaño, Bernardo, Ling, Clare L., Tangmanakit, Jiraporn, Turner, Paul, Parkhill, Julian
Publicado en Microb Genom (2019)

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

por Chewapreecha, Claire, Marttinen, Pekka, Croucher, Nicholas J., Salter, Susannah J., Harris, Simon R., Mather, Alison E., Hanage, William P., Goldblatt, David, Nosten, Francois H., Turner, Claudia, Turner, Paul, Bentley, Stephen D., Parkhill, Julian
Publicado 2014

Freshwater monitoring by nanopore sequencing

por Urban, Lara, Holzer, Andre, Baronas, J Jotautas, Hall, Michael B, Braeuninger-Weimer, Philipp, Scherm, Michael J, Kunz, Daniel J, Perera, Surangi N, Martin-Herranz, Daniel E, Tipper, Edward T, Salter, Susannah J, Stammnitz, Maximilian R
Publicado en eLife (2021)

Dense genomic sampling identifies highways of pneumococcal recombination

por Chewapreecha, Claire, Harris, Simon R, Croucher, Nicholas J, Turner, Claudia, Marttinen, Pekka, Cheng, Lu, Pessia, Alberto, Aanensen, David M, Mather, Alison E, Page, Andrew J, Salter, Susannah J., Harris, David, Nosten, Francois, Goldblatt, David, Corander, Jukka, Parkhill, Julian, Turner, Paul, Bentley, Stephen D
Publicado 2014

Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection

por Croucher, Nicholas J., Mitchell, Andrea M., Gould, Katherine A., Inverarity, Donald, Barquist, Lars, Feltwell, Theresa, Fookes, Maria C., Harris, Simon R., Dordel, Janina, Salter, Susannah J., Browall, Sarah, Zemlickova, Helena, Parkhill, Julian, Normark, Staffan, Henriques-Normark, Birgitta, Hinds, Jason, Mitchell, Tim J., Bentley, Stephen D.
Publicado 2013

Global Phylogenomic Analysis of Nonencapsulated Streptococcus pneumoniae Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages

por Hilty, Markus, Wüthrich, Daniel, Salter, Susannah J., Engel, Hansjürg, Campbell, Samuel, Sá-Leão, Raquel, de Lencastre, Hermínia, Hermans, Peter, Sadowy, Ewa, Turner, Paul, Chewapreecha, Claire, Diggle, Mathew, Pluschke, Gerd, McGee, Lesley, Köseoğlu Eser, Özgen, Low, Donald E., Smith-Vaughan, Heidi, Endimiani, Andrea, Küffer, Marianne, Dupasquier, Mélanie, Beaudoing, Emmanuel, Weber, Johann, Bruggmann, Rémy, Hanage, William P., Parkhill, Julian, Hathaway, Lucy J., Mühlemann, Kathrin, Bentley, Stephen D.
Publicado en Genome Biol Evol (2014)