Multiomics analysis of tolerant interaction of potato with potato virus Y

door Stare, Tjaša, Ramšak, Živa, Križnik, Maja, Gruden, Kristina
Gepubliceerd in Sci Data (2019)

Interactive exploration of heterogeneous biological networks with Biomine Explorer

door Podpečan, Vid, Ramšak, Živa, Gruden, Kristina, Toivonen, Hannu, Lavrač, Nada
Gepubliceerd in Bioinformatics (2019)

Heterogeneous glioblastoma cell cross-talk promotes phenotype alterations and enhanced drug resistance

door Motaln, Helena, Koren, Ana, Gruden, Kristina, Ramšak, Živa, Schichor, Christian, Lah, Tamara T.
Gepubliceerd in Oncotarget (2015)

DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R

door Zagorščak, Maja, Blejec, Andrej, Ramšak, Živa, Petek, Marko, Stare, Tjaša, Gruden, Kristina
Gepubliceerd in Plant Methods (2018)

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology

door Ramšak, Živa, Baebler, Špela, Rotter, Ana, Korbar, Matej, Mozetič, Igor, Usadel, Björn, Gruden, Kristina
Gepubliceerd in 2014

Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni

door Foix, Laura, Nadal, Anna, Zagorščak, Maja, Ramšak, Živa, Esteve-Codina, Anna, Gruden, Kristina, Pla, Maria
Gepubliceerd in BMC Genomics (2021)

Network Modeling Unravels Mechanisms of Crosstalk between Ethylene and Salicylate Signaling in Potato

door Ramšak, Živa, Coll, Anna, Stare, Tjaša, Tzfadia, Oren, Baebler, Špela, Van de Peer, Yves, Gruden, Kristina
Gepubliceerd in Plant Physiol (2018)

Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

door Stare, Tjaša, Ramšak, Živa, Blejec, Andrej, Stare, Katja, Turnšek, Neža, Weckwerth, Wolfram, Wienkoop, Stefanie, Vodnik, Dominik, Gruden, Kristina
Gepubliceerd in BMC Genomics (2015)

Erratum to: Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

door Stare, Tjaša, Ramšak, Živa, Blejec, Andrej, Stare, Katja, Turnšek, Neža, Weckwerth, Wolfram, Wienkoop, Stefanie, Vodnik, Dominik, Gruden, Kristina
Gepubliceerd in BMC Genomics (2017)

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

door Petek, Marko, Zagorščak, Maja, Ramšak, Živa, Sanders, Sheri, Tomaž, Špela, Tseng, Elizabeth, Zouine, Mohamed, Coll, Anna, Gruden, Kristina
Gepubliceerd in Sci Data (2020)

Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection

door Križnik, Maja, Petek, Marko, Dobnik, David, Ramšak, Živa, Baebler, Špela, Pollmann, Stephan, Kreuze, Jan F., Žel, Jana, Gruden, Kristina
Gepubliceerd in Front Plant Sci (2017)

New Cross-Talks between Pathways Involved in Grapevine Infection with ‘Candidatus Phytoplasma solani’ Revealed by Temporal Network Modelling

door Škrlj, Blaž, Novak, Maruša Pompe, Brader, Günter, Anžič, Barbara, Ramšak, Živa, Gruden, Kristina, Kralj, Jan, Kladnik, Aleš, Lavrač, Nada, Roitsch, Thomas, Dermastia, Marina
Gepubliceerd in Plants (Basel) (2021)

Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat

door Ghatak, Arindam, Chaturvedi, Palak, Bachmann, Gert, Valledor, Luis, Ramšak, Živa, Bazargani, Mitra Mohammadi, Bajaj, Prasad, Jegadeesan, Sridharan, Li, Weimin, Sun, Xiaoliang, Gruden, Kristina, Varshney, Rajeev K., Weckwerth, Wolfram
Gepubliceerd in Front Plant Sci (2021)

Differential Response of Grapevine to Infection with ‘Candidatus Phytoplasma solani’ in Early and Late Growing Season through Complex Regulation of mRNA and Small RNA Transcriptome...

door Dermastia, Marina, Škrlj, Blaž, Strah, Rebeka, Anžič, Barbara, Tomaž, Špela, Križnik, Maja, Schönhuber, Christina, Riedle-Bauer, Monika, Ramšak, Živa, Petek, Marko, Kladnik, Aleš, Lavrač, Nada, Gruden, Kristina, Roitsch, Thomas, Brader, Günter, Pompe-Novak, Maruša
Gepubliceerd in Int J Mol Sci (2021)

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

door Papoutsoglou, Evangelia A., Faria, Daniel, Arend, Daniel, Arnaud, Elizabeth, Athanasiadis, Ioannis N., Chaves, Inês, Coppens, Frederik, Cornut, Guillaume, Costa, Bruno V., Ćwiek‐Kupczyńska, Hanna, Droesbeke, Bert, Finkers, Richard, Gruden, Kristina, Junker, Astrid, King, Graham J., Krajewski, Paweł, Lange, Matthias, Laporte, Marie‐Angélique, Michotey, Célia, Oppermann, Markus, Ostler, Richard, Poorter, Hendrik, Ramírez‐Gonzalez, Ricardo, Ramšak, Živa, Reif, Jochen C., Rocca‐Serra, Philippe, Sansone, Susanna‐Assunta, Scholz, Uwe, Tardieu, François, Uauy, Cristobal, Usadel, Björn, Visser, Richard G. F., Weise, Stephan, Kersey, Paul J., Miguel, Célia M., Adam‐Blondon, Anne‐Françoise, Pommier, Cyril
Gepubliceerd in New Phytol (2020)