Inferring Epidemiological Dynamics with Bayesian Coalescent Inference: The Merits of Deterministic and Stochastic Models

by Popinga, Alex, Vaughan, Tim, Stadler, Tanja, Drummond, Alexei J.
Published in Genetics (2015)

Efficient Bayesian inference under the structured coalescent

by Vaughan, Timothy G., Kühnert, Denise, Popinga, Alex, Welch, David, Drummond, Alexei J.
Published 2014

Mitogenomic diversity in Sacred Ibis Mummies sheds light on early Egyptian practices

by Wasef, Sally, Subramanian, Sankar, O’Rorke, Richard, Huynen, Leon, El-Marghani, Samia, Curtis, Caitlin, Popinga, Alex, Holland, Barbara, Ikram, Salima, Millar, Craig, Willerslev, Eske, Lambert, David
Published in PLoS One (2019)

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

by Bouckaert, Remco, Vaughan, Timothy G., Barido-Sottani, Joëlle, Duchêne, Sebastián, Fourment, Mathieu, Gavryushkina, Alexandra, Heled, Joseph, Jones, Graham, Kühnert, Denise, De Maio, Nicola, Matschiner, Michael, Mendes, Fábio K., Müller, Nicola F., Ogilvie, Huw A., du Plessis, Louis, Popinga, Alex, Rambaut, Andrew, Rasmussen, David, Siveroni, Igor, Suchard, Marc A., Wu, Chieh-Hsi, Xie, Dong, Zhang, Chi, Stadler, Tanja, Drummond, Alexei J.
Published in PLoS Comput Biol (2019)