foodMASST a mass spectrometry search tool for foods and beverages

Por Kiana A. West, Robin Schmid, Julia M. Gauglitz, Mingxun Wang, Pieter C. Dorrestein
Publicado em 2022-04-01

Proteomics

Por Benjamin A. Garcia, Helen J. Cooper, Pieter C. Dorrestein, Kai Tang, Beatrix M. Ueberheide
Publicado em 2010-01-01

Elucidating the CXCL12/CXCR4 signaling network in chronic lymphocytic leukemia through phosphoproteomics analysis.

Por Morgan O'Hayre, Catherina L Salanga, Thomas J Kipps, Davorka Messmer, Pieter C Dorrestein, Tracy M Handel
Publicado em 2010-07-01

Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome.

Por Laura-Isobel McCall, Anupriya Tripathi, Fernando Vargas, Rob Knight, Pieter C Dorrestein, Jair L Siqueira-Neto
Publicado em 2018-03-01

Spatial metabolomics identifies localized chemical changes in heart tissue during chronic cardiac Chagas Disease.

Por Danya A Dean, Gautham Gautham, Jair L Siqueira-Neto, James H McKerrow, Pieter C Dorrestein, Laura-Isobel McCall
Publicado em 2021-10-01

Applying Tissue Separation and Untargeted Metabolomics to Understanding Lipid Saturation Kinetics of Host Mitochondria and Symbiotic Algae in Corals Under High Temperature Stress

Por Andrea Gamba, Daniel Petras, Daniel Petras, Mark Little, Brandie White, Pieter C. Dorrestein, Forest Rohwer, Rachel A. Foster, Aaron C. Hartmann
Publicado em 2022-05-01

SIMILE enables alignment of tandem mass spectra with statistical significance

Por Daniel G. C. Treen, Mingxun Wang, Shipei Xing, Katherine B. Louie, Tao Huan, Pieter C. Dorrestein, Trent R. Northen, Benjamin P. Bowen
Publicado em 2022-05-01

Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites

Por Xuanji Li, Asker Daniel Brejnrod, Madeleine Ernst, Martin Rykær, Jakob Herschend, Nanna Mee Coops Olsen, Pieter C. Dorrestein, Christopher Rensing, Søren Johannes Sørensen
Publicado em 2019-05-01

Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study

Por Alan K. Jarmusch, Alison Vrbanac, Jeremiah D. Momper, Joseph D. Ma, Maher Alhaja, Marlon Liyanage, Rob Knight, Pieter C. Dorrestein, Shirley M. Tsunoda
Publicado em 2020-09-01

Mass Spectrometry Imaging Reveals Elevated Glomerular ATP/AMP in Diabetes/obesity and Identifies Sphingomyelin as a Possible Mediator

Por Satoshi Miyamoto, Cheng-Chih Hsu, Gregory Hamm, Manjula Darshi, Maggie Diamond-Stanic, Anne-Emilie Declèves, Larkin Slater, Subramaniam Pennathur, Jonathan Stauber, Pieter C. Dorrestein, Kumar Sharma
Publicado em 2016-05-01

Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage.

Por Rashel V Grindberg, Thomas Ishoey, Dumitru Brinza, Eduardo Esquenazi, R Cameron Coates, Wei-ting Liu, Lena Gerwick, Pieter C Dorrestein, Pavel Pevzner, Roger Lasken, William H Gerwick
Publicado em 2011-04-01

Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds

Por Menno evan der Voort, Harold eMeijer, Yvonne eSchmidt, Jeramie eWatrous, Ester eDekkers, Rodrigo eMendes, Pieter C. Dorrestein, Harald eGross, Jos M Raaijmakers
Publicado em 2015-07-01

Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism

Por Nader F. AbuSara, Brandon M. Piercey, Marcus A. Moore, Arshad Ali Shaikh, Louis-Félix Nothias, Santosh K. Srivastava, Pablo Cruz-Morales, Pieter C. Dorrestein, Francisco Barona-Gómez, Kapil Tahlan
Publicado em 2019-11-01

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

Por Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo-Rodríguez, Louis-Felix Nothias, Joe Wandy, Christopher Chen, Mingxun Wang, Simon Rogers, Marnix H. Medema, Pieter C. Dorrestein, Justin J.J. van der Hooft
Publicado em 2019-07-01

The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study)

Por Shiyu S. Bai-Tong, Megan S. Thoemmes, Kelly C. Weldon, Diba Motazavi, Jessica Kitsen, Shalisa Hansen, Annalee Furst, Bob Geng, Se Jin Song, Jack A. Gilbert, Lars Bode, Pieter C. Dorrestein, Rob Knight, Sydney A. Leibel, Sandra L. Leibel
Publicado em 2022-04-01

Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family

Por Helena Mannochio-Russo, Helena Mannochio-Russo, Rafael F. de Almeida, Rafael F. de Almeida, Wilhan D. G. Nunes, Paula C. P. Bueno, Paula C. P. Bueno, Andrés M. Caraballo-Rodríguez, Anelize Bauermeister, Pieter C. Dorrestein, Vanderlan S. Bolzani
Publicado em 2022-04-01

The impact of skin care products on skin chemistry and microbiome dynamics

Por Amina Bouslimani, Ricardo da Silva, Tomasz Kosciolek, Stefan Janssen, Chris Callewaert, Amnon Amir, Kathleen Dorrestein, Alexey V. Melnik, Livia S. Zaramela, Ji-Nu Kim, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Caitriona Brennan, Tal Luzzatto-Knaan, Gail Ackermann, Daniel McDonald, Karsten Zengler, Rob Knight, Pieter C. Dorrestein
Publicado em 2019-06-01

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads

Por Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner, Rob Knight
Publicado em 2019-10-01