Protein-Coding Genes of Helicobacter pylori Predominantly Present Purifying Selection though Many Membrane Proteins Suffer from Selection Pressure: A Proposal to Analyze Bacterial...

por Rubio, Alejandro, Pérez-Pulido, Antonio J.
Publicado en Genes (Basel) (2021)

orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins

por Mier, Pablo, Andrade-Navarro, Miguel A., Pérez-Pulido, Antonio J.
Publicado en PLoS One (2015)

Automated selection of homologs to track the evolutionary history of proteins

por Mier, Pablo, Pérez-Pulido, Antonio J., Andrade-Navarro, Miguel A.
Publicado en BMC Bioinformatics (2018)

Ancient evolutionary signals of protein-coding sequences allow the discovery of new genes in the Drosophila melanogaster genome

por Casimiro-Soriguer, Carlos S., Rubio, Alejandro, Jimenez, Juan, Pérez-Pulido, Antonio J.
Publicado en BMC Genomics (2020)

AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions

por Jimenez, Juan, Duncan, Caia D. S., Gallardo, María, Mata, Juan, Perez-Pulido, Antonio J.
Publicado en DNA Res (2015)

Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family

por Mier, Pablo, Pérez-Pulido, Antonio J., Reynaud, Emmanuel G., Andrade-Navarro, Miguel A.
Publicado en PLoS One (2017)

Sma3s: A Three-Step Modular Annotator for Large Sequence Datasets

por Muñoz-Mérida, Antonio, Viguera, Enrique, Claros, M. Gonzalo, Trelles, Oswaldo, Pérez-Pulido, Antonio J.
Publicado 2014

CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats

por Rubio, Alejandro, Mier, Pablo, Andrade-Navarro, Miguel A, Garzón, Andrés, Jiménez, Juan, Pérez-Pulido, Antonio J
Publicado en Database (Oxford) (2020)

MOWServ: a web client for integration of bioinformatic resources

por Ramírez, Sergio, Muñoz-Mérida, Antonio, Karlsson, Johan, García, Maximiliano, Pérez-Pulido, Antonio J., Claros, M. Gonzalo, Trelles, Oswaldo
Publicado 2010

Classification of protein motifs based on subcellular localization uncovers evolutionary relationships at both sequence and functional levels

por Parras-Moltó, Marcos, Campos-Laborie, Francisco J, García-Diéguez, Juan, Rodríguez-Griñolo, M Rosario, Pérez-Pulido, Antonio J
Publicado 2013

Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA

por García-Romero, Inmaculada, Pérez-Pulido, Antonio J., González-Flores, Yolanda Elisabet, Reyes-Ramírez, Francisca, Santero, Eduardo, Floriano, Belén
Publicado en BMC Genomics (2016)

Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators

por Pérez-Pulido, Antonio J, Asencio-Cortés, Gualberto, Brokate-Llanos, Ana M, Brea-Calvo, Gloria, Rodríguez-Griñolo, Rosario, Garzón, Andrés, Muñoz, Manuel J
Publicado en Brief Bioinform (2021)

Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators and co-option of cellular pa...

por Pérez-Pulido, Antonio J., Asencio-Cortés, Gualberto, Brokate-Llanos, Ana M., Brea-Calvo, Gloria, Rodríguez-Griñolo, Rosario, Garzón, Andrés, Muñoz, Manuel J.
Publicado en bioRxiv (2020)

Identification of O-mannosylated Virulence Factors in Ustilago maydis

por Fernández-Álvarez, Alfonso, Marín-Menguiano, Miriam, Lanver, Daniel, Jiménez-Martín, Alberto, Elías-Villalobos, Alberto, Pérez-Pulido, Antonio J., Kahmann, Regine, Ibeas, José I.
Publicado 2012

Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclu...

por Mangas, Eugenio L., Rubio, Alejandro, Álvarez-Marín, Rocío, Labrador-Herrera, Gema, Pachón, Jerónimo, Pachón-Ibáñez, María Eugenia, Divina, Federico, Pérez-Pulido, Antonio J.
Publicado en Microb Genom (2019)

Multiple Genome Sequences of Lactobacillus pentosus Strains Isolated from Biofilms on the Skin of Fermented Green Table Olives

por Calero-Delgado, Beatriz, Pérez-Pulido, Antonio J., Benítez-Cabello, Antonio, Martín-Platero, Antonio M., Casimiro-Soriguer, Carlos S., Martínez-Bueno, Manuel, Arroyo-López, Francisco Noé, Jiménez Díaz, Rufino
Publicado en Microbiol Resour Announc (2019)

PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers

por Sablok, Gaurav, Pérez-Pulido, Antonio J., Do, Thac, Seong, Tan Y., Casimiro-Soriguer, Carlos S., La Porta, Nicola, Ralph, Peter J., Squartini, Andrea, Muñoz-Merida, Antonio, Harikrishna, Jennifer A.
Publicado en Front Plant Sci (2016)

Virulence role of the outer membrane protein CarO in carbapenem-resistant Acinetobacter baumannii

por Labrador-Herrera, Gema, Pérez-Pulido, Antonio J., Álvarez-Marín, Rocío, Casimiro-Soriguer, Carlos S., Cebrero-Cangueiro, Tania, Morán-Barrio, Jorgelina, Pachón, Jerónimo, Viale, Alejandro M., Pachón-Ibáñez, María Eugenia
Publicado en Virulence (2020)

Insight into Potential Probiotic Markers Predicted in Lactobacillus pentosus MP-10 Genome Sequence

por Abriouel, Hikmate, Pérez Montoro, Beatriz, Casimiro-Soriguer, Carlos S., Pérez Pulido, Antonio J., Knapp, Charles W., Caballero Gómez, Natacha, Castillo-Gutiérrez, Sonia, Estudillo-Martínez, María D., Gálvez, Antonio, Benomar, Nabil
Publicado en Front Microbiol (2017)

The transcriptional response to the olive fruit fly (Bactrocera oleae) reveals extended differences between tolerant and susceptible olive (Olea europaea L.) varieties

por Grasso, Filomena, Coppola, Mariangela, Carbone, Fabrizio, Baldoni, Luciana, Alagna, Fiammetta, Perrotta, Gaetano, Pérez-Pulido, Antonio J., Garonna, Antonio, Facella, Paolo, Daddiego, Loretta, Lopez, Loredana, Vitiello, Alessia, Rao, Rosa, Corrado, Giandomenico
Publicado en PLoS One (2017)