aliFreeFold: an alignment-free approach to predict secondary structure from homologous RNA sequences

Por Glouzon, Jean-Pierre Séhi, Ouangraoua, Aïda
Publicado no Bioinformatics (2018)

Genome dedoubling by DCJ and reversal

Por Thomas, Antoine, Varré, Jean-Stéphane, Ouangraoua, Aïda
Publicado em 2011

Reconstructing a SuperGeneTree minimizing reconciliation

Por Lafond, Manuel, Ouangraoua, Aïda, El-Mabrouk, Nadia
Publicado no BMC Bioinformatics (2015)

ProCARs: Progressive Reconstruction of Ancestral Gene Orders

Por Perrin, Amandine, Varré, Jean-Stéphane, Blanquart, Samuel, Ouangraoua, Aïda
Publicado no BMC Genomics (2015)

Aligning coding sequences with frameshift extension penalties

Por Jammali, Safa, Kuitche, Esaie, Rachati, Ayoub, Bélanger, François, Scott, Michelle, Ouangraoua, Aïda
Publicado no Algorithms Mol Biol (2017)

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Por Allali, Julien, Saule, Cédric, Chauve, Cédric, d'Aubenton-Carafa, Yves, Denise, Alain, Drevet, Christine, Ferraro, Pascal, Gautheret, Daniel, Herrbach, Claire, Leclerc, Fabrice, de Monte, Antoine, Ouangraoua, Aida, Sagot, Marie-France, Termier, Michel, Thermes, Claude, Touzet, Hélène
Publicado em 2012

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins

Por Samandi, Sondos, Roy, Annie V, Delcourt, Vivian, Lucier, Jean-François, Gagnon, Jules, Beaudoin, Maxime C, Vanderperre, Benoît, Breton, Marc-André, Motard, Julie, Jacques, Jean-François, Brunelle, Mylène, Gagnon-Arsenault, Isabelle, Fournier, Isabelle, Ouangraoua, Aida, Hunting, Darel J, Cohen, Alan A, Landry, Christian R, Scott, Michelle S, Roucou, Xavier
Publicado no eLife (2017)