Molecular Dynamics/Order Parameter eXtrapolation (MD/OPX) for Bionanosystem Simulations

od Miao, Yinglong, Ortoleva, Peter J.
Izdano 2009

Nanosystem Self-Assembly Pathways Discovered via All-Atom Multiscale Analysis

od Pankavich, Stephen D., Ortoleva, Peter J.
Izdano 2012

Variational methods for time-dependent classical many-particle systems

od Sereda, Yuriy V., Ortoleva, Peter J.
Izdano 2013

Multiscale Factorization Method for Simulating Mesoscopic Systems with Atomic Precision

od Abi Mansour, Andrew, Ortoleva, Peter J.
Izdano 2014

Hierarchical Order Parameters for Macromolecular Assembly Simulations I: Construction and Dynamical Properties of Order Parameters

od Singharoy, Abhishek, Sereda, Yuriy, Ortoleva, Peter J.
Izdano 2012

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory

od Sayyed-Ahmad, Abdallah, Tuncay, Kagan, Ortoleva, Peter J
Izdano 2007

All-atom Multiscale Simulation of Cowpea Chlorotic Mottle Virus Capsid Swelling

od Miao, Yinglong, Johnson, John E., Ortoleva, Peter J.
Izdano 2010

Space Warping Order Parameters and Symmetry: Application to Multiscale Simulation of Macromolecular Assemblies

od Singharoy, Abhishek, Joshi, Harshad, Miao, Yinglong, Ortoleva, Peter J.
izdano v J Phys Chem B (2012)

Discovering Free Energy Basins for Macromolecular Systems via Guided Multiscale Simulation

od Sereda, Yuriy V., Singharoy, Abhishek B., Jarrold, Martin F., Ortoleva, Peter J.
Izdano 2012

Multiscale Simulation of Microbe Structure and Dynamics

od Joshi, Harshad, Singharoy, Abhishek, Sereda, Yuriy V., Cheluvaraja, Srinath C., Ortoleva, Peter J.
Izdano 2011