Molecular Dynamics/Order Parameter eXtrapolation (MD/OPX) for Bionanosystem Simulations

по Miao, Yinglong, Ortoleva, Peter J.
Опубликовано 2009

Nanosystem Self-Assembly Pathways Discovered via All-Atom Multiscale Analysis

по Pankavich, Stephen D., Ortoleva, Peter J.
Опубликовано 2012

Variational methods for time-dependent classical many-particle systems

по Sereda, Yuriy V., Ortoleva, Peter J.
Опубликовано 2013

Multiscale Factorization Method for Simulating Mesoscopic Systems with Atomic Precision

по Abi Mansour, Andrew, Ortoleva, Peter J.
Опубликовано 2014

Hierarchical Order Parameters for Macromolecular Assembly Simulations I: Construction and Dynamical Properties of Order Parameters

по Singharoy, Abhishek, Sereda, Yuriy, Ortoleva, Peter J.
Опубликовано 2012

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory

по Sayyed-Ahmad, Abdallah, Tuncay, Kagan, Ortoleva, Peter J
Опубликовано 2007

All-atom Multiscale Simulation of Cowpea Chlorotic Mottle Virus Capsid Swelling

по Miao, Yinglong, Johnson, John E., Ortoleva, Peter J.
Опубликовано 2010

Space Warping Order Parameters and Symmetry: Application to Multiscale Simulation of Macromolecular Assemblies

по Singharoy, Abhishek, Joshi, Harshad, Miao, Yinglong, Ortoleva, Peter J.
Опубликовано в: J Phys Chem B (2012)

Discovering Free Energy Basins for Macromolecular Systems via Guided Multiscale Simulation

по Sereda, Yuriy V., Singharoy, Abhishek B., Jarrold, Martin F., Ortoleva, Peter J.
Опубликовано 2012

Multiscale Simulation of Microbe Structure and Dynamics

по Joshi, Harshad, Singharoy, Abhishek, Sereda, Yuriy V., Cheluvaraja, Srinath C., Ortoleva, Peter J.
Опубликовано 2011