Molecular Dynamics/Order Parameter eXtrapolation (MD/OPX) for Bionanosystem Simulations

מאת Miao, Yinglong, Ortoleva, Peter J.
יצא לאור 2009

Nanosystem Self-Assembly Pathways Discovered via All-Atom Multiscale Analysis

מאת Pankavich, Stephen D., Ortoleva, Peter J.
יצא לאור 2012

Variational methods for time-dependent classical many-particle systems

מאת Sereda, Yuriy V., Ortoleva, Peter J.
יצא לאור 2013

Multiscale Factorization Method for Simulating Mesoscopic Systems with Atomic Precision

מאת Abi Mansour, Andrew, Ortoleva, Peter J.
יצא לאור 2014

Hierarchical Order Parameters for Macromolecular Assembly Simulations I: Construction and Dynamical Properties of Order Parameters

מאת Singharoy, Abhishek, Sereda, Yuriy, Ortoleva, Peter J.
יצא לאור 2012

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory

מאת Sayyed-Ahmad, Abdallah, Tuncay, Kagan, Ortoleva, Peter J
יצא לאור 2007

All-atom Multiscale Simulation of Cowpea Chlorotic Mottle Virus Capsid Swelling

מאת Miao, Yinglong, Johnson, John E., Ortoleva, Peter J.
יצא לאור 2010

Space Warping Order Parameters and Symmetry: Application to Multiscale Simulation of Macromolecular Assemblies

מאת Singharoy, Abhishek, Joshi, Harshad, Miao, Yinglong, Ortoleva, Peter J.
הוצא לאור ב J Phys Chem B (2012)

Discovering Free Energy Basins for Macromolecular Systems via Guided Multiscale Simulation

מאת Sereda, Yuriy V., Singharoy, Abhishek B., Jarrold, Martin F., Ortoleva, Peter J.
יצא לאור 2012

Multiscale Simulation of Microbe Structure and Dynamics

מאת Joshi, Harshad, Singharoy, Abhishek, Sereda, Yuriy V., Cheluvaraja, Srinath C., Ortoleva, Peter J.
יצא לאור 2011