Molecular Dynamics/Order Parameter eXtrapolation (MD/OPX) for Bionanosystem Simulations

ανά Miao, Yinglong, Ortoleva, Peter J.
Έκδοση 2009

Nanosystem Self-Assembly Pathways Discovered via All-Atom Multiscale Analysis

ανά Pankavich, Stephen D., Ortoleva, Peter J.
Έκδοση 2012

Variational methods for time-dependent classical many-particle systems

ανά Sereda, Yuriy V., Ortoleva, Peter J.
Έκδοση 2013

Multiscale Factorization Method for Simulating Mesoscopic Systems with Atomic Precision

ανά Abi Mansour, Andrew, Ortoleva, Peter J.
Έκδοση 2014

Hierarchical Order Parameters for Macromolecular Assembly Simulations I: Construction and Dynamical Properties of Order Parameters

ανά Singharoy, Abhishek, Sereda, Yuriy, Ortoleva, Peter J.
Έκδοση 2012

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory

ανά Sayyed-Ahmad, Abdallah, Tuncay, Kagan, Ortoleva, Peter J
Έκδοση 2007

All-atom Multiscale Simulation of Cowpea Chlorotic Mottle Virus Capsid Swelling

ανά Miao, Yinglong, Johnson, John E., Ortoleva, Peter J.
Έκδοση 2010

Space Warping Order Parameters and Symmetry: Application to Multiscale Simulation of Macromolecular Assemblies

ανά Singharoy, Abhishek, Joshi, Harshad, Miao, Yinglong, Ortoleva, Peter J.
Τόπος έκδοσης J Phys Chem B (2012)

Discovering Free Energy Basins for Macromolecular Systems via Guided Multiscale Simulation

ανά Sereda, Yuriy V., Singharoy, Abhishek B., Jarrold, Martin F., Ortoleva, Peter J.
Έκδοση 2012

Multiscale Simulation of Microbe Structure and Dynamics

ανά Joshi, Harshad, Singharoy, Abhishek, Sereda, Yuriy V., Cheluvaraja, Srinath C., Ortoleva, Peter J.
Έκδοση 2011