Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis

著者: Noyes, Noelle, Cho, Kyu-Chul, Ravel, Jacques, Forney, Larry J., Abdo, Zaid
出版年 PLoS One (2018)

Metagenome SNP calling via read-colored de Bruijn graphs

著者: Alipanahi, Bahar, Muggli, Martin D, Jundi, Musa, Noyes, Noelle R, Boucher, Christina
出版年 Bioinformatics (2020)

Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?

著者: Slizovskiy, Ilya B., Mukherjee, Kingshuk, Dean, Christopher J., Boucher, Christina, Noyes, Noelle R.
出版年 Front Microbiol (2020)

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

著者: Marini, Simone, Oliva, Marco, Slizovskiy, Ilya B., Noyes, Noelle Robertson, Boucher, Christina, Prosperi, Mattia
出版年 Front Genet (2021)

Genome Sequence of Listeria innocua Strain MEZLIS26, Isolated from a Goat in South Africa

著者: El Zowalaty, Mohamed E., Hickman, Rachel A., Moura, Alexandra, Lecuit, Marc, Zishiri, Oliver T., Noyes, Noelle, Järhult, Josef D.
出版年 Microbiol Resour Announc (2019)

PrP(C) knockdown by liposome-siRNA-peptide complexes (LSPCs) prolongs survival and normal behavior of prion-infected mice immunotolerant to treatment

著者: Bender, Heather, Noyes, Noelle, Annis, Jessica L., Hitpas, Amanda, Mollnow, Luke, Croak, Kendra, Kane, Sarah, Wagner, Kaitlyn, Dow, Steven, Zabel, Mark
出版年 PLoS One (2019)

Succinct colored de Bruijn graphs

著者: Muggli, Martin D., Bowe, Alexander, Noyes, Noelle R., Morley, Paul S., Belk, Keith E., Raymond, Robert, Gagie, Travis, Puglisi, Simon J., Boucher, Christina
出版年 Bioinformatics (2017)

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

著者: Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
出版年 Nucleic Acids Res (2019)

Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use

著者: Benedict, Katharine M., Gow, Sheryl P., McAllister, Tim A., Booker, Calvin W., Hannon, Sherry J., Checkley, Sylvia L., Noyes, Noelle R., Morley, Paul S.
出版年 PLoS One (2015)

Impact of sequencing depth on the characterization of the microbiome and resistome

著者: Zaheer, Rahat, Noyes, Noelle, Ortega Polo, Rodrigo, Cook, Shaun R., Marinier, Eric, Van Domselaar, Gary, Belk, Keith E., Morley, Paul S., McAllister, Tim A.
出版年 Sci Rep (2018)

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification

著者: Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Linke, Lyndsey, Magnuson, Roberta, Boucher, Christina, Belk, Keith E., Morley, Paul S.
出版年 Front Microbiol (2019)

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

著者: Lakin, Steven M., Kuhnle, Alan, Alipanahi, Bahar, Noyes, Noelle R., Dean, Chris, Muggli, Martin, Raymond, Rob, Abdo, Zaid, Prosperi, Mattia, Belk, Keith E., Morley, Paul S., Boucher, Christina
出版年 Commun Biol (2019)

Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle

著者: Weinroth, Margaret D., Scott, H. Morgan, Norby, Bo, Loneragan, Guy H., Noyes, Noelle R., Rovira, Pablo, Doster, Enrique, Yang, Xiang, Woerner, Dale R., Morley, Paul S., Belk, Keith E.
出版年 Appl Environ Microbiol (2018)

Circulation of Plasmids Harboring Resistance Genes to Quinolones and/or Extended-Spectrum Cephalosporins in Multiple Salmonella enterica Serotypes from Swine in the United States

著者: Elnekave, Ehud, Hong, Samuel L., Lim, Seunghyun, Hayer, Shivdeep S., Boxrud, Dave, Taylor, Angela J., Lappi, Victoria, Noyes, Noelle, Johnson, Timothy J., Rovira, Albert, Davies, Peter, Perez, Andres, Alvarez, Julio
出版年 Antimicrob Agents Chemother (2019)

MEGARes: an antimicrobial resistance database for high throughput sequencing

著者: Lakin, Steven M., Dean, Chris, Noyes, Noelle R., Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L., Ruiz, Jaime, Belk, Keith E., Morley, Paul S., Boucher, Christina
出版年 Nucleic Acids Res (2017)

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

著者: Yang, Xiang, Noyes, Noelle R., Doster, Enrique, Martin, Jennifer N., Linke, Lyndsey M., Magnuson, Roberta J., Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina, Morley, Paul S., Belk, Keith E.
出版年 Appl Environ Microbiol (2016)

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

著者: Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Lakin, Steven M., Dean, Christopher J., Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I., Boucher, Christina, Ruiz, Jamie, Belk, Keith E., Morley, Paul S.
出版年 Front Microbiol (2018)

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

著者: Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
出版年 Front Microbiol (2019)

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease

著者: Owen, Joseph R., Noyes, Noelle, Young, Amy E., Prince, Daniel J., Blanchard, Patricia C., Lehenbauer, Terry W., Aly, Sharif S., Davis, Jessica H., O’Rourke, Sean M., Abdo, Zaid, Belk, Keith, Miller, Michael R., Morley, Paul, Van Eenennaam, Alison L.
出版年 G3 (Bethesda) (2017)

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

著者: Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina A., Belk, Keith E., Morley, Paul S.
出版年 Microbiome (2017)