Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis

by Noyes, Noelle, Cho, Kyu-Chul, Ravel, Jacques, Forney, Larry J., Abdo, Zaid
Published in PLoS One (2018)

Metagenome SNP calling via read-colored de Bruijn graphs

by Alipanahi, Bahar, Muggli, Martin D, Jundi, Musa, Noyes, Noelle R, Boucher, Christina
Published in Bioinformatics (2020)

Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?

by Slizovskiy, Ilya B., Mukherjee, Kingshuk, Dean, Christopher J., Boucher, Christina, Noyes, Noelle R.
Published in Front Microbiol (2020)

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

by Marini, Simone, Oliva, Marco, Slizovskiy, Ilya B., Noyes, Noelle Robertson, Boucher, Christina, Prosperi, Mattia
Published in Front Genet (2021)

Genome Sequence of Listeria innocua Strain MEZLIS26, Isolated from a Goat in South Africa

by El Zowalaty, Mohamed E., Hickman, Rachel A., Moura, Alexandra, Lecuit, Marc, Zishiri, Oliver T., Noyes, Noelle, Järhult, Josef D.
Published in Microbiol Resour Announc (2019)

PrP(C) knockdown by liposome-siRNA-peptide complexes (LSPCs) prolongs survival and normal behavior of prion-infected mice immunotolerant to treatment

by Bender, Heather, Noyes, Noelle, Annis, Jessica L., Hitpas, Amanda, Mollnow, Luke, Croak, Kendra, Kane, Sarah, Wagner, Kaitlyn, Dow, Steven, Zabel, Mark
Published in PLoS One (2019)

Succinct colored de Bruijn graphs

by Muggli, Martin D., Bowe, Alexander, Noyes, Noelle R., Morley, Paul S., Belk, Keith E., Raymond, Robert, Gagie, Travis, Puglisi, Simon J., Boucher, Christina
Published in Bioinformatics (2017)

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

by Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
Published in Nucleic Acids Res (2019)

Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use

by Benedict, Katharine M., Gow, Sheryl P., McAllister, Tim A., Booker, Calvin W., Hannon, Sherry J., Checkley, Sylvia L., Noyes, Noelle R., Morley, Paul S.
Published in PLoS One (2015)

Impact of sequencing depth on the characterization of the microbiome and resistome

by Zaheer, Rahat, Noyes, Noelle, Ortega Polo, Rodrigo, Cook, Shaun R., Marinier, Eric, Van Domselaar, Gary, Belk, Keith E., Morley, Paul S., McAllister, Tim A.
Published in Sci Rep (2018)

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification

by Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Linke, Lyndsey, Magnuson, Roberta, Boucher, Christina, Belk, Keith E., Morley, Paul S.
Published in Front Microbiol (2019)

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

by Lakin, Steven M., Kuhnle, Alan, Alipanahi, Bahar, Noyes, Noelle R., Dean, Chris, Muggli, Martin, Raymond, Rob, Abdo, Zaid, Prosperi, Mattia, Belk, Keith E., Morley, Paul S., Boucher, Christina
Published in Commun Biol (2019)

Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle

by Weinroth, Margaret D., Scott, H. Morgan, Norby, Bo, Loneragan, Guy H., Noyes, Noelle R., Rovira, Pablo, Doster, Enrique, Yang, Xiang, Woerner, Dale R., Morley, Paul S., Belk, Keith E.
Published in Appl Environ Microbiol (2018)

Circulation of Plasmids Harboring Resistance Genes to Quinolones and/or Extended-Spectrum Cephalosporins in Multiple Salmonella enterica Serotypes from Swine in the United States

by Elnekave, Ehud, Hong, Samuel L., Lim, Seunghyun, Hayer, Shivdeep S., Boxrud, Dave, Taylor, Angela J., Lappi, Victoria, Noyes, Noelle, Johnson, Timothy J., Rovira, Albert, Davies, Peter, Perez, Andres, Alvarez, Julio
Published in Antimicrob Agents Chemother (2019)

MEGARes: an antimicrobial resistance database for high throughput sequencing

by Lakin, Steven M., Dean, Chris, Noyes, Noelle R., Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L., Ruiz, Jaime, Belk, Keith E., Morley, Paul S., Boucher, Christina
Published in Nucleic Acids Res (2017)

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

by Yang, Xiang, Noyes, Noelle R., Doster, Enrique, Martin, Jennifer N., Linke, Lyndsey M., Magnuson, Roberta J., Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina, Morley, Paul S., Belk, Keith E.
Published in Appl Environ Microbiol (2016)

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

by Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Lakin, Steven M., Dean, Christopher J., Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I., Boucher, Christina, Ruiz, Jamie, Belk, Keith E., Morley, Paul S.
Published in Front Microbiol (2018)

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

by Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
Published in Front Microbiol (2019)

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease

by Owen, Joseph R., Noyes, Noelle, Young, Amy E., Prince, Daniel J., Blanchard, Patricia C., Lehenbauer, Terry W., Aly, Sharif S., Davis, Jessica H., O’Rourke, Sean M., Abdo, Zaid, Belk, Keith, Miller, Michael R., Morley, Paul, Van Eenennaam, Alison L.
Published in G3 (Bethesda) (2017)

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

by Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina A., Belk, Keith E., Morley, Paul S.
Published in Microbiome (2017)