Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis

Por Noyes, Noelle, Cho, Kyu-Chul, Ravel, Jacques, Forney, Larry J., Abdo, Zaid
Publicado no PLoS One (2018)

Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?

Por Slizovskiy, Ilya B., Mukherjee, Kingshuk, Dean, Christopher J., Boucher, Christina, Noyes, Noelle R.
Publicado no Front Microbiol (2020)

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

Por Marini, Simone, Oliva, Marco, Slizovskiy, Ilya B., Noyes, Noelle Robertson, Boucher, Christina, Prosperi, Mattia
Publicado no Front Genet (2021)

Genome Sequence of Listeria innocua Strain MEZLIS26, Isolated from a Goat in South Africa

Por El Zowalaty, Mohamed E., Hickman, Rachel A., Moura, Alexandra, Lecuit, Marc, Zishiri, Oliver T., Noyes, Noelle, Järhult, Josef D.
Publicado no Microbiol Resour Announc (2019)

PrP(C) knockdown by liposome-siRNA-peptide complexes (LSPCs) prolongs survival and normal behavior of prion-infected mice immunotolerant to treatment

Por Bender, Heather, Noyes, Noelle, Annis, Jessica L., Hitpas, Amanda, Mollnow, Luke, Croak, Kendra, Kane, Sarah, Wagner, Kaitlyn, Dow, Steven, Zabel, Mark
Publicado no PLoS One (2019)

Succinct colored de Bruijn graphs

Por Muggli, Martin D., Bowe, Alexander, Noyes, Noelle R., Morley, Paul S., Belk, Keith E., Raymond, Robert, Gagie, Travis, Puglisi, Simon J., Boucher, Christina
Publicado no Bioinformatics (2017)

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

Por Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
Publicado no Nucleic Acids Res (2019)

Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use

Por Benedict, Katharine M., Gow, Sheryl P., McAllister, Tim A., Booker, Calvin W., Hannon, Sherry J., Checkley, Sylvia L., Noyes, Noelle R., Morley, Paul S.
Publicado no PLoS One (2015)

Impact of sequencing depth on the characterization of the microbiome and resistome

Por Zaheer, Rahat, Noyes, Noelle, Ortega Polo, Rodrigo, Cook, Shaun R., Marinier, Eric, Van Domselaar, Gary, Belk, Keith E., Morley, Paul S., McAllister, Tim A.
Publicado no Sci Rep (2018)

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification

Por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Linke, Lyndsey, Magnuson, Roberta, Boucher, Christina, Belk, Keith E., Morley, Paul S.
Publicado no Front Microbiol (2019)

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

Por Lakin, Steven M., Kuhnle, Alan, Alipanahi, Bahar, Noyes, Noelle R., Dean, Chris, Muggli, Martin, Raymond, Rob, Abdo, Zaid, Prosperi, Mattia, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado no Commun Biol (2019)

Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle

Por Weinroth, Margaret D., Scott, H. Morgan, Norby, Bo, Loneragan, Guy H., Noyes, Noelle R., Rovira, Pablo, Doster, Enrique, Yang, Xiang, Woerner, Dale R., Morley, Paul S., Belk, Keith E.
Publicado no Appl Environ Microbiol (2018)

Circulation of Plasmids Harboring Resistance Genes to Quinolones and/or Extended-Spectrum Cephalosporins in Multiple Salmonella enterica Serotypes from Swine in the United States

Por Elnekave, Ehud, Hong, Samuel L., Lim, Seunghyun, Hayer, Shivdeep S., Boxrud, Dave, Taylor, Angela J., Lappi, Victoria, Noyes, Noelle, Johnson, Timothy J., Rovira, Albert, Davies, Peter, Perez, Andres, Alvarez, Julio
Publicado no Antimicrob Agents Chemother (2019)

MEGARes: an antimicrobial resistance database for high throughput sequencing

Por Lakin, Steven M., Dean, Chris, Noyes, Noelle R., Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L., Ruiz, Jaime, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado no Nucleic Acids Res (2017)

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

Por Yang, Xiang, Noyes, Noelle R., Doster, Enrique, Martin, Jennifer N., Linke, Lyndsey M., Magnuson, Roberta J., Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina, Morley, Paul S., Belk, Keith E.
Publicado no Appl Environ Microbiol (2016)

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

Por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Lakin, Steven M., Dean, Christopher J., Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I., Boucher, Christina, Ruiz, Jamie, Belk, Keith E., Morley, Paul S.
Publicado no Front Microbiol (2018)

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

Por Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
Publicado no Front Microbiol (2019)

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease

Por Owen, Joseph R., Noyes, Noelle, Young, Amy E., Prince, Daniel J., Blanchard, Patricia C., Lehenbauer, Terry W., Aly, Sharif S., Davis, Jessica H., O’Rourke, Sean M., Abdo, Zaid, Belk, Keith, Miller, Michael R., Morley, Paul, Van Eenennaam, Alison L.
Publicado no G3 (Bethesda) (2017)

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

Por Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina A., Belk, Keith E., Morley, Paul S.
Publicado no Microbiome (2017)

Resistome diversity in cattle and the environment decreases during beef production

Por Noyes, Noelle R, Yang, Xiang, Linke, Lyndsey M, Magnuson, Roberta J, Dettenwanger, Adam, Cook, Shaun, Geornaras, Ifigenia, Woerner, Dale E, Gow, Sheryl P, McAllister, Tim A, Yang, Hua, Ruiz, Jaime, Jones, Kenneth L, Boucher, Christina A, Morley, Paul S, Belk, Keith E
Publicado no eLife (2016)