Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method

by Schneider, Thomas D., Mastronarde, David N.
Published 1996

Automated Tilt Series Alignment and Tomographic Reconstruction in IMOD

by Mastronarde, David N., Held, Susannah R.
Published in J Struct Biol (2016)

Clustering and Variance Maps For Cryo-electron Tomography Using Wedge-Masked Differences

by Heumann, John M., Hoenger, Andreas, Mastronarde, David N.
Published 2011

Nuclear Pore Complex Number and Distribution throughout the Saccharomyces cerevisiae Cell Cycle by Three-Dimensional Reconstruction from Electron Micrographs of Nuclear Envelopes

by Winey, Mark, Yarar, Defne, Giddings, Thomas H., Mastronarde, David N.
Published 1997

Cryo-electron tomography of microtubule-kinesin motor complexes

by Cope, Julia, Gilbert, Susan, Rayment, Ivan, Mastronarde, David, Hoenger, Andreas
Published 2009

The challenge of determining handedness in electron tomography and the use of DNA origami gold nanoparticle helices as molecular standards

by Briegel, Ariane, Pilhofer, Martin, Mastronarde, David N., Jensen, Grant J.
Published 2013

Practical Experience with Hole-Free Phase Plates for Cryo Electron Microscopy

by Marko, Michael, Hsieh, Chyongere, Leith, Eric, Mastronarde, David, Motoki, Sohei
Published in Microsc Microanal (2016)

Electron Tomography of Yeast Cells

by O’Toole, Eileen T., Winey, Mark, McIntosh, J. Richard., Mastronarde, David N.
Published in Methods Enzymol (2002)

Software tools for automated Transmission Electron Microscopy

by Schorb, Martin, Haberbosch, Isabella, Hagen, Wim JH, Schwab, Yannick, Mastronarde, David N
Published in Nat Methods (2019)

Three-Dimensional Analysis of Syncytial-Type Cell Plates during Endosperm Cellularization Visualized by High Resolution Electron Tomography

by Otegui, Marisa S., Mastronarde, David N., Kang, Byung-Ho, Bednarek, Sebastian Y., Staehelin, L. Andrew
Published 2001

Three-dimensional Ultrastructure of Saccharomyces cerevisiae Meiotic Spindles

by Winey, Mark, Morgan, Garry P., Straight, Paul D., Giddings, Thomas H., Mastronarde, David N.
Published 2005

CTF Determination and Correction for Low Dose Tomographic Tilt Series

by Xiong, Quanren, Morphew, Mary K., Schwartz, Cindi L., Hoenger, Andreas H., Mastronarde, David N.
Published 2009

Golgi Structure in Three Dimensions: Functional Insights from the Normal Rat Kidney Cell

by Ladinsky, Mark S., Mastronarde, David N., McIntosh, J. Richard, Howell, Kathryn E., Staehelin, L. Andrew
Published 1999

ER sliding dynamics and ER–mitochondrial contacts occur on acetylated microtubules

by Friedman, Jonathan R., Webster, Brant M., Mastronarde, David N., Verhey, Kristen J., Voeltz, Gia K.
Published 2010

Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography

by Marsh, Brad J., Mastronarde, David N., Buttle, Karolyn F., Howell, Kathryn E., McIntosh, J. Richard
Published 2001

Using Rapid Freeze and Freeze-Substitution for the Preparation of Yeast Cells for Electron Microscopy and Three-Dimensional Analysis

by Giddings, Thomas H., O’Toole, Eileen T., Morphew, Mary, Mastronarde, David N., McIntosh, J. Richard, Winey, Mark
Published in Methods Cell Biol (2001)

MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography

by Cheng, Anchi, Henderson, Richard, Mastronarde, David, Ludtke, Steven J., Schoenmakers, Remco H.M., Short, Judith, Marabini, Roberto, Dallakyan, Sargis, Agard, David, Winn, Martyn
Published in J Struct Biol (2015)

A Computational Framework for Ultrastructural Mapping of Neural Circuitry

by Anderson, James R, Jones, Bryan W, Yang, Jia-Hui, Shaw, Marguerite V, Watt, Carl B, Koshevoy, Pavel, Spaltenstein, Joel, Jurrus, Elizabeth, UV, Kannan, Whitaker, Ross T, Mastronarde, David, Tasdizen, Tolga, Marc, Robert E
Published 2009

Exploring the retinal connectome

by Anderson, James R., Jones, Bryan W., Watt, Carl B., Shaw, Margaret V., Yang, Jia-Hui, DeMill, David, Lauritzen, James S., Lin, Yanhua, Rapp, Kevin D., Mastronarde, David, Koshevoy, Pavel, Grimm, Bradley, Tasdizen, Tolga, Whitaker, Ross, Marc, Robert E.
Published 2011

Data management challenges in three-dimensional EM

by Patwardhan, Ardan, Carazo, José-Maria, Carragher, Bridget, Henderson, Richard, Heymann, J Bernard, Hill, Emma, Jensen, Grant J, Lagerstedt, Ingvar, Lawson, Catherine L, Ludtke, Steven J, Mastronarde, David, Moore, William J, Roseman, Alan, Rosenthal, Peter, Sorzano, Carlos-Oscar S, Sanz-García, Eduardo, Scheres, Sjors H W, Subramaniam, Sriram, Westbrook, John, Winn, Martyn, Swedlow, Jason R, Kleywegt, Gerard J
Published 2012