DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure

nork Trieu, Tuan, Martinez-Fundichely, Alexander, Khurana, Ekta
Argitaratua izan da Genome Biol (2020)

CNCDatabase: a database of non-coding cancer drivers

nork Liu, Eric Minwei, Martinez-Fundichely, Alexander, Bollapragada, Rajesh, Spiewack, Maurice, Khurana, Ekta
Argitaratua izan da Nucleic Acids Res (2020)

InvFEST, a database integrating information of polymorphic inversions in the human genome

nork Martínez-Fundichely, Alexander, Casillas, Sònia, Egea, Raquel, Ràmia, Miquel, Barbadilla, Antonio, Pantano, Lorena, Puig, Marta, Cáceres, Mario
Argitaratua 2014

PeSV-Fisher: Identification of Somatic and Non-Somatic Structural Variants Using Next Generation Sequencing Data

nork Escaramís, Geòrgia, Tornador, Cristian, Bassaganyas, Laia, Rabionet, Raquel, Tubio, Jose M. C., Martínez-Fundichely, Alexander, Cáceres, Mario, Gut, Marta, Ossowski, Stephan, Estivill, Xavier
Argitaratua 2013

Correction: PeSV-Fisher: Identification of Somatic and Non-Somatic Structural Variants Using Next Generation Sequencing Data

nork Escaramís, Geòrgia, Tornador, Cristian, Bassaganyas, Laia, Rabionet, Raquel, Tubio, Jose M. C., Martínez-Fundichely, Alexander, Cáceres, Mario, Gut, Marta, Ossowski, Stephan, Estivill, Xavier
Argitaratua 2013

Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network

nork Dhingra, Priyanka, Martinez-Fundichely, Alexander, Berger, Adeline, Huang, Franklin W., Forbes, Andre Neil, Liu, Eric Minwei, Liu, Deli, Sboner, Andrea, Tamayo, Pablo, Rickman, David S., Rubin, Mark A., Khurana, Ekta
Argitaratua izan da Genome Biol (2017)

Identification of cancer drivers at CTCF insulators in 1,962 whole-genomes

nork Liu, Eric Minwei, Martinez-Fundichely, Alexander, Diaz, Bianca Jay, Aronson, Boaz, Cuykendall, Tawny, MacKay, Matthew, Dhingra, Priyanka, Wong, Elissa W. P., Chi, Ping, Apostolou, Effie, Sanjana, Neville E., Khurana, Ekta
Argitaratua izan da Cell Syst (2019)

Validation and Genotyping of Multiple Human Polymorphic Inversions Mediated by Inverted Repeats Reveals a High Degree of Recurrence

nork Aguado, Cristina, Gayà-Vidal, Magdalena, Villatoro, Sergi, Oliva, Meritxell, Izquierdo, David, Giner-Delgado, Carla, Montalvo, Víctor, García-González, Judit, Martínez-Fundichely, Alexander, Capilla, Laia, Ruiz-Herrera, Aurora, Estivill, Xavier, Puig, Marta, Cáceres, Mario
Argitaratua 2014

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

nork Kumar, Sushant, Warrell, Jonathan, Li, Shantao, McGillivray, Patrick D., Meyerson, William, Salichos, Leonidas, Harmanci, Arif, Martinez-Fundichely, Alexander, Chan, Calvin W.Y., Nielsen, Morten Muhlig, Lochovsky, Lucas, Zhang, Yan, Li, Xiaotong, Lou, Shaoke, Pedersen, Jakob Skou, Herrmann, Carl, Getz, Gad, Khurana, Ekta, Gerstein, Mark B.
Argitaratua izan da Cell (2020)