A markov classification model for metabolic pathways

por Hancock, Timothy, Mamitsuka, Hiroshi
Publicado 2010

Classification of Promoters Based on the Combination of Core Promoter Elements Exhibits Different Histone Modification Patterns

por Natsume-Kitatani, Yayoi, Mamitsuka, Hiroshi
Publicado en PLoS One (2016)

Mining metabolic pathways through gene expression

por Hancock, Timothy, Takigawa, Ichigaku, Mamitsuka, Hiroshi
Publicado 2010

Mining Significant Substructure Pairs for Interpreting Polypharmacology in Drug-Target Network

por Takigawa, Ichigaku, Tsuda, Koji, Mamitsuka, Hiroshi
Publicado 2011

Genome-Wide Integration on Transcription Factors, Histone Acetylation and Gene Expression Reveals Genes Co-Regulated by Histone Modification Patterns

por Natsume-Kitatani, Yayoi, Shiga, Motoki, Mamitsuka, Hiroshi
Publicado 2011

SiBIC: A Web Server for Generating Gene Set Networks Based on Biclusters Obtained by Maximal Frequent Itemset Mining

por Takahashi, Kei-ichiro, Takigawa, Ichigaku, Mamitsuka, Hiroshi
Publicado 2013

Improving drug response prediction by integrating multiple data sources: matrix factorization, kernel and network-based approaches

por Güvenç Paltun, Betül, Mamitsuka, Hiroshi, Kaski, Samuel
Publicado en Brief Bioinform (2019)

Application of a New Probabilistic Model for Mining Implicit Associated Cancer Genes from OMIM and Medline

por Zhu, Shanfeng, Okuno, Yasushi, Tsujimoto, Gozoh, Mamitsuka, Hiroshi
Publicado 2007

Identifying Neighborhoods of Coordinated Gene Expression and Metabolite Profiles

por Hancock, Timothy, Wicker, Nicolas, Takigawa, Ichigaku, Mamitsuka, Hiroshi
Publicado 2012

Prediction of MHC Class I Binding Peptides by a Query Learning Algorithm Based on Hidden Markov Models

por Udaka, Keiko, Mamitsuka, Hiroshi, Nakaseko, Yukinobu, Abe, Naoki
Publicado 2002

SIMPLE: Sparse Interaction Model over Peaks of moLEcules for fast, interpretable metabolite identification from tandem mass spectra

por Nguyen, Dai Hai, Nguyen, Canh Hao, Mamitsuka, Hiroshi
Publicado en Bioinformatics (2018)

ADAPTIVE: leArning DAta-dePendenT, concIse molecular VEctors for fast, accurate metabolite identification from tandem mass spectra

por Nguyen, Dai Hai, Nguyen, Canh Hao, Mamitsuka, Hiroshi
Publicado en Bioinformatics (2019)

Modelling [Formula: see text] with historical weather information improves genomic prediction in new environments

por Gillberg, Jussi, Marttinen, Pekka, Mamitsuka, Hiroshi, Kaski, Samuel
Publicado en Bioinformatics (2019)

Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches

por Nguyen, Dai Hai, Nguyen, Canh Hao, Mamitsuka, Hiroshi
Publicado en Brief Bioinform (2018)

DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction

por You, Ronghui, Yao, Shuwei, Mamitsuka, Hiroshi, Zhu, Shanfeng
Publicado en Bioinformatics (2021)

NetPathMiner: R/Bioconductor package for network path mining through gene expression

por Mohamed, Ahmed, Hancock, Timothy, Nguyen, Canh Hao, Mamitsuka, Hiroshi
Publicado en Bioinformatics (2014)

Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data

por Kayano, Mitsunori, Takigawa, Ichigaku, Shiga, Motoki, Tsuda, Koji, Mamitsuka, Hiroshi
Publicado 2009

HAMSTER: visualizing microarray experiments as a set of minimum spanning trees

por Wan, Raymond, Kiseleva, Larisa, Harada, Hajime, Mamitsuka, Hiroshi, Horton, Paul
Publicado 2009

MetaMHC: a meta approach to predict peptides binding to MHC molecules

por Hu, Xihao, Zhou, Wenjian, Udaka, Keiko, Mamitsuka, Hiroshi, Zhu, Shanfeng
Publicado 2010

Calpain Cleavage Prediction Using Multiple Kernel Learning

por duVerle, David A., Ono, Yasuko, Sorimachi, Hiroyuki, Mamitsuka, Hiroshi
Publicado 2011