Reconstruction of human protein interolog network using evolutionary conserved network

Autor Huang, Tao-Wei, Lin, Chung-Yen, Kao, Cheng-Yan
Vydáno 2007

SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

Autor Yang, Li-An, Chang, Yu-Jung, Chen, Shu-Hwa, Lin, Chung-Yen, Ho, Jan-Ming
Vydáno v BMC Genomics (2019)

The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays

Autor Chen, Shu-Hwa, Lo, Chen-Zen, Tsai, Ming-Chi, Hsiung, Chao A, Lin, Chung-Yen
Vydáno 2008

A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles

Autor Chin, Chia-Hao, Chen, Shu-Hwa, Ho, Chin-Wen, Ko, Ming-Tat, Lin, Chung-Yen
Vydáno 2010

Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures

Autor Mayfield, Anderson B, Wang, Yu-Bin, Chen, Chii-Shiarng, Lin, Chung-Yen, Chen, Shu-Hwa
Vydáno v Mol Ecol (2014)

Precise genotyping and recombination detection of Enterovirus

Autor Lin, Chieh-Hua, Wang, Yu-Bin, Chen, Shu-Hwa, Hsiung, Chao Agnes, Lin, Chung-Yen
Vydáno v BMC Genomics (2015)

De Novo Assembly of the Whole Transcriptome of the Wild Embryo, Preleptocephalus, Leptocephalus, and Glass Eel of Anguilla japonica and Deciphering the Digestive and Absorptive Cap...

Autor Hsu, Hsiang-Yi, Chen, Shu-Hwa, Cha, Yuh-Ru, Tsukamoto, Katsumi, Lin, Chung-Yen, Han, Yu-San
Vydáno v PLoS One (2015)

Genomic shotgun array: a procedure linking large-scale DNA sequencing with regional transcript mapping

Autor Li, Ling-Hui, Li, Jian-Chiuan, Lin, Yung-Feng, Lin, Chung-Yen, Chen, Chung-Yung, Tsai, Shih-Feng
Vydáno 2004

Hubba: hub objects analyzer—a framework of interactome hubs identification for network biology

Autor Lin, Chung-Yen, Chin, Chia-Hao, Wu, Hsin-Hung, Chen, Shu-Hwa, Ho, Chin-Wen, Ko, Ming-Tat
Vydáno 2008

UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level

Autor Chen, Shu-Hwa, Lo, Chen-Zen, Su, Sheng-Yao, Kuo, Bao-Han, Hsiung, Chao A, Lin, Chung-Yen
Vydáno 2010

cytoHubba: identifying hub objects and sub-networks from complex interactome

Autor Chin, Chia-Hao, Chen, Shu-Hwa, Wu, Hsin-Hung, Ho, Chin-Wen, Ko, Ming-Tat, Lin, Chung-Yen
Vydáno v BMC Syst Biol (2014)

Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework

Autor Fang, Chih-Hao, Chang, Yu-Jung, Chung, Wei-Chun, Hsieh, Ping-Heng, Lin, Chung-Yen, Ho, Jan-Ming
Vydáno v BMC Genomics (2015)

ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq

Autor Lu, Rita Jui-Hsien, Liu, Yen-Ting, Huang, Chih Wei, Yen, Ming-Ren, Lin, Chung-Yen, Chen, Pao-Yang
Vydáno v Front Genet (2021)

Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)

Autor Lu, Hsiao-Pei, Wang, Yu-bin, Huang, Shiao-Wei, Lin, Chung-Yen, Wu, Martin, Hsieh, Chih-hao, Yu, Hon-Tsen
Vydáno 2012

POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis

Autor Lin, Chung-Yen, Lin, Fan-Kai, Lin, Chieh Hua, Lai, Li-Wei, Hsu, Hsiu-Jun, Chen, Shu-Hwa, Hsiung, Chao A.
Vydáno 2005

PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors

Autor Chen, Shu-Hwa, Su, Sheng-Yao, Lo, Chen-Zen, Chen, Kuei-Hsien, Huang, Teng-Jay, Kuo, Bo-Han, Lin, Chung-Yen
Vydáno 2009

Simultaneous Detection of Multiple Fish Pathogens Using a Naked-Eye Readable DNA Microarray

Autor Chang, Chin-I, Hung, Pei-Hsin, Wu, Chia-Che, Cheng, Ta Chih, Tsai, Jyh-Ming, Lin, King-Jung, Lin, Chung-Yen
Vydáno 2012

TEA: the epigenome platform for Arabidopsis methylome study

Autor Su, Sheng-Yao, Chen, Shu-Hwa, Lu, I-Hsuan, Chiang, Yih-Shien, Wang, Yu-Bin, Chen, Pao-Yang, Lin, Chung-Yen
Vydáno v BMC Genomics (2016)

A gene profiling deconvolution approach to estimating immune cell composition from complex tissues

Autor Chen, Shu-Hwa, Kuo, Wen-Yu, Su, Sheng-Yao, Chung, Wei-Chun, Ho, Jen-Ming, Lu, Henry Horng-Shing, Lin, Chung-Yen
Vydáno v BMC Bioinformatics (2018)

The role of the bacterial protease Prc in the uropathogenesis of extraintestinal pathogenic Escherichia coli

Autor Huang, Wen-Chun, Lin, Chung-Yen, Hashimoto, Masayuki, Wu, Jiunn-Jong, Wang, Ming-Cheng, Lin, Wei-Hung, Chen, Chang-Shi, Teng, Ching-Hao
Vydáno v J Biomed Sci (2020)