Reconstruction of human protein interolog network using evolutionary conserved network

von Huang, Tao-Wei, Lin, Chung-Yen, Kao, Cheng-Yan
Veröffentlicht 2007

SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

von Yang, Li-An, Chang, Yu-Jung, Chen, Shu-Hwa, Lin, Chung-Yen, Ho, Jan-Ming
Veröffentlicht in BMC Genomics (2019)

The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays

von Chen, Shu-Hwa, Lo, Chen-Zen, Tsai, Ming-Chi, Hsiung, Chao A, Lin, Chung-Yen
Veröffentlicht 2008

A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles

von Chin, Chia-Hao, Chen, Shu-Hwa, Ho, Chin-Wen, Ko, Ming-Tat, Lin, Chung-Yen
Veröffentlicht 2010

Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures

von Mayfield, Anderson B, Wang, Yu-Bin, Chen, Chii-Shiarng, Lin, Chung-Yen, Chen, Shu-Hwa
Veröffentlicht in Mol Ecol (2014)

Precise genotyping and recombination detection of Enterovirus

von Lin, Chieh-Hua, Wang, Yu-Bin, Chen, Shu-Hwa, Hsiung, Chao Agnes, Lin, Chung-Yen
Veröffentlicht in BMC Genomics (2015)

De Novo Assembly of the Whole Transcriptome of the Wild Embryo, Preleptocephalus, Leptocephalus, and Glass Eel of Anguilla japonica and Deciphering the Digestive and Absorptive Cap...

von Hsu, Hsiang-Yi, Chen, Shu-Hwa, Cha, Yuh-Ru, Tsukamoto, Katsumi, Lin, Chung-Yen, Han, Yu-San
Veröffentlicht in PLoS One (2015)

Genomic shotgun array: a procedure linking large-scale DNA sequencing with regional transcript mapping

von Li, Ling-Hui, Li, Jian-Chiuan, Lin, Yung-Feng, Lin, Chung-Yen, Chen, Chung-Yung, Tsai, Shih-Feng
Veröffentlicht 2004

Hubba: hub objects analyzer—a framework of interactome hubs identification for network biology

von Lin, Chung-Yen, Chin, Chia-Hao, Wu, Hsin-Hung, Chen, Shu-Hwa, Ho, Chin-Wen, Ko, Ming-Tat
Veröffentlicht 2008

UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level

von Chen, Shu-Hwa, Lo, Chen-Zen, Su, Sheng-Yao, Kuo, Bao-Han, Hsiung, Chao A, Lin, Chung-Yen
Veröffentlicht 2010

cytoHubba: identifying hub objects and sub-networks from complex interactome

von Chin, Chia-Hao, Chen, Shu-Hwa, Wu, Hsin-Hung, Ho, Chin-Wen, Ko, Ming-Tat, Lin, Chung-Yen
Veröffentlicht in BMC Syst Biol (2014)

Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework

von Fang, Chih-Hao, Chang, Yu-Jung, Chung, Wei-Chun, Hsieh, Ping-Heng, Lin, Chung-Yen, Ho, Jan-Ming
Veröffentlicht in BMC Genomics (2015)

ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq

von Lu, Rita Jui-Hsien, Liu, Yen-Ting, Huang, Chih Wei, Yen, Ming-Ren, Lin, Chung-Yen, Chen, Pao-Yang
Veröffentlicht in Front Genet (2021)

Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)

von Lu, Hsiao-Pei, Wang, Yu-bin, Huang, Shiao-Wei, Lin, Chung-Yen, Wu, Martin, Hsieh, Chih-hao, Yu, Hon-Tsen
Veröffentlicht 2012

POWER: PhylOgenetic WEb Repeater—an integrated and user-optimized framework for biomolecular phylogenetic analysis

von Lin, Chung-Yen, Lin, Fan-Kai, Lin, Chieh Hua, Lai, Li-Wei, Hsu, Hsiu-Jun, Chen, Shu-Hwa, Hsiung, Chao A.
Veröffentlicht 2005

PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors

von Chen, Shu-Hwa, Su, Sheng-Yao, Lo, Chen-Zen, Chen, Kuei-Hsien, Huang, Teng-Jay, Kuo, Bo-Han, Lin, Chung-Yen
Veröffentlicht 2009

Simultaneous Detection of Multiple Fish Pathogens Using a Naked-Eye Readable DNA Microarray

von Chang, Chin-I, Hung, Pei-Hsin, Wu, Chia-Che, Cheng, Ta Chih, Tsai, Jyh-Ming, Lin, King-Jung, Lin, Chung-Yen
Veröffentlicht 2012

TEA: the epigenome platform for Arabidopsis methylome study

von Su, Sheng-Yao, Chen, Shu-Hwa, Lu, I-Hsuan, Chiang, Yih-Shien, Wang, Yu-Bin, Chen, Pao-Yang, Lin, Chung-Yen
Veröffentlicht in BMC Genomics (2016)

A gene profiling deconvolution approach to estimating immune cell composition from complex tissues

von Chen, Shu-Hwa, Kuo, Wen-Yu, Su, Sheng-Yao, Chung, Wei-Chun, Ho, Jen-Ming, Lu, Henry Horng-Shing, Lin, Chung-Yen
Veröffentlicht in BMC Bioinformatics (2018)

The role of the bacterial protease Prc in the uropathogenesis of extraintestinal pathogenic Escherichia coli

von Huang, Wen-Chun, Lin, Chung-Yen, Hashimoto, Masayuki, Wu, Jiunn-Jong, Wang, Ming-Cheng, Lin, Wei-Hung, Chen, Chang-Shi, Teng, Ching-Hao
Veröffentlicht in J Biomed Sci (2020)