Quadruplex-forming DNA sequences spread by retrotransposons may serve as genome regulators

by Kejnovsky, Eduard, Lexa, Matej
Published 2014

What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?

by Jedlicka, Pavel, Lexa, Matej, Kejnovsky, Eduard
Published in Front Plant Sci (2020)

Quadruplex DNA in long terminal repeats in maize LTR retrotransposons inhibits the expression of a reporter gene in yeast

by Tokan, Viktor, Puterova, Janka, Lexa, Matej, Kejnovsky, Eduard
Published in BMC Genomics (2018)

Dynamics of Endogenous Cytokinin Pools in Tobacco Seedlings: a Modelling Approach

by LEXA, MATEJ, GENKOV, TODOR, MALBECK, JIŘÍ, MACHÁČKOVÁ, IVANA, BRZOBOHATÝ, BŘETISLAV
Published in Ann Bot (2003)

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico stud...

by Jedlicka, Pavel, Lexa, Matej, Vanat, Ivan, Hobza, Roman, Kejnovsky, Eduard
Published in Mob DNA (2019)

Correction to: Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions:...

by Jedlicka, Pavel, Lexa, Matej, Vanat, Ivan, Hobza, Roman, Kejnovsky, Eduard
Published in Mob DNA (2020)

TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting

by Lexa, Matej, Jedlicka, Pavel, Vanat, Ivan, Cervenansky, Michal, Kejnovsky, Eduard
Published in Bioinformatics (2020)

Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets

by Krejci, Adam, Hupp, Ted R., Lexa, Matej, Vojtesek, Borivoj, Muller, Petr
Published in Bioinformatics (2016)

Quadruplex-forming sequences occupy discrete regions inside plant LTR retrotransposons

by Lexa, Matej, Kejnovský, Eduard, Šteflová, Pavlína, Konvalinová, Helena, Vorlíčková, Michaela, Vyskot, Boris
Published 2014

Guanine quadruplexes are formed by specific regions of human transposable elements

by Lexa, Matej, Steflova, Pavlina, Martinek, Tomas, Vorlickova, Michaela, Vyskot, Boris, Kejnovsky, Eduard
Published in BMC Genomics (2014)

Effects of Isoflavone-Enriched Feed on the Rumen Microbiota in Dairy Cows

by Kasparovska, Jitka, Pecinkova, Martina, Dadakova, Katerina, Krizova, Ludmila, Hadrova, Sylvie, Lexa, Matej, Lochman, Jan, Kasparovsky, Tomas
Published in PLoS One (2016)

Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains

by Bartas, Martin, Goswami, Pratik, Lexa, Matej, Červeň, Jiří, Volná, Adriana, Fojta, Miroslav, Brázda, Václav, Pečinka, Petr
Published in Brief Bioinform (2021)

Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY(1)Y(2)) in the Dioecious Plant Rumex acetosa

by Steflova, Pavlina, Tokan, Viktor, Vogel, Ivan, Lexa, Matej, Macas, Jiri, Novak, Petr, Hobza, Roman, Vyskot, Boris, Kejnovsky, Eduard
Published 2013

The Impact of DNA Extraction Methods on Stool Bacterial and Fungal Microbiota Community Recovery

by Fiedorová, Kristýna, Radvanský, Matěj, Němcová, Eva, Grombiříková, Hana, Bosák, Juraj, Černochová, Michaela, Lexa, Matej, Šmajs, David, Freiberger, Tomáš
Published in Front Microbiol (2019)

Escherichia coli Strains Producing Selected Bacteriocins Inhibit Porcine Enterotoxigenic Escherichia coli (ETEC) under both In Vitro and In Vivo Conditions

by Hrala, Matěj, Bosák, Juraj, Micenková, Lenka, Křenová, Jitka, Lexa, Matej, Pirková, Viktória, Tomáštíková, Zuzana, Koláčková, Ivana, Šmajs, David
Published in Appl Environ Microbiol (2021)

Patients With Common Variable Immunodeficiency (CVID) Show Higher Gut Bacterial Diversity and Levels of Low-Abundance Genes Than the Healthy Housemates

by Bosák, Juraj, Lexa, Matej, Fiedorová, Kristýna, Gadara, Darshak C., Micenková, Lenka, Spacil, Zdenek, Litzman, Jiří, Freiberger, Tomáš, Šmajs, David
Published in Front Immunol (2021)

High-throughput analysis revealed mutations’ diverging effects on SMN1 exon 7 splicing

by Souček, Přemysl, Réblová, Kamila, Kramárek, Michal, Radová, Lenka, Grymová, Tereza, Hujová, Pavla, Kováčová, Tatiana, Lexa, Matej, Grodecká, Lucie, Freiberger, Tomáš
Published in RNA Biol (2019)

SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci

by Goswami, Pratik, Bartas, Martin, Lexa, Matej, Bohálová, Natália, Volná, Adriana, Červeň, Jiří, Červeňová, Veronika, Pečinka, Petr, Špunda, Vladimír, Fojta, Miroslav, Brázda, Václav
Published in Brief Bioinform (2020)

Preferential Binding of Hot Spot Mutant p53 Proteins to Supercoiled DNA In Vitro and in Cells

by Brázdová, Marie, Navrátilová, Lucie, Tichý, Vlastimil, Němcová, Kateřina, Lexa, Matej, Hrstka, Roman, Pečinka, Petr, Adámik, Matej, Vojtesek, Borivoj, Paleček, Emil, Deppert, Wolfgang, Fojta, Miroslav
Published 2013

Bacterial but Not Fungal Gut Microbiota Alterations Are Associated With Common Variable Immunodeficiency (CVID) Phenotype

by Fiedorová, Kristýna, Radvanský, Matěj, Bosák, Juraj, Grombiříková, Hana, Němcová, Eva, Králíčková, Pavlína, Černochová, Michaela, Kotásková, Iva, Lexa, Matej, Litzman, Jiří, Šmajs, David, Freiberger, Tomáš
Published in Front Immunol (2019)