MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads

door Tyakht, Alexander V, Popenko, Anna S, Belenikin, Maxim S, Altukhov, Ilya A, Pavlenko, Alexander V, Kostryukova, Elena S, Selezneva, Oksana V, Larin, Andrei K, Karpova, Irina Y, Alexeev, Dmitry G
Gepubliceerd in 2012

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue

door Tyakht, Alexander V, Ilina, Elena N, Alexeev, Dmitry G, Ischenko, Dmitry S, Gorbachev, Alexey Y, Semashko, Tatiana A, Larin, Andrei K, Selezneva, Oksana V, Kostryukova, Elena S, Karalkin, Pavel A, Vakhrushev, Igor V, Kurbatov, Leonid K, Archakov, Alexander I, Govorun, Vadim M
Gepubliceerd in BMC Genomics (2014)

Draft genomes of Enterococcus faecium strains isolated from human feces before and after eradication therapy against Helicobacter pylori

door Prianichnikov, Nikita A., Malakhova, Maja V., Babenko, Vlad V., Larin, Andrei K., Olekhnovich, Evgenii I., Starikova, Elizaveta V., Chuvelev, Dmitry I., Glushchenko, Oksana E., Samoilov, Andrei E., Manolov, Alexander I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Ilina, Elena N., Kostryukova, Elena S.
Gepubliceerd in Data Brief (2017)

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy

door Glushchenko, Oksana E., Samoilov, Andrei E., Olekhnovich, Evgenii I., Kovarsky, Boris A., Tyakht, Alexander V., Pavlenko, Alexander V., Babenko, Vlad V., Larin, Andrei K., Kostryukova, Elena S., Malakhova, Maja V., Ilina, Elena N., Abdulkhakov, Rustem A., Safina, Dilyara I., Grigoryeva, Tatiana V., Abdulkhakov, Sayar R., Govorun, Vadim M.
Gepubliceerd in Data Brief (2017)

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis

door Tyakht, Alexander V., Dubinkina, Veronika B., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitski, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
Gepubliceerd in Data Brief (2017)

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease

door Dubinkina, Veronika B., Tyakht, Alexander V., Odintsova, Vera Y., Yarygin, Konstantin S., Kovarsky, Boris A., Pavlenko, Alexander V., Ischenko, Dmitry S., Popenko, Anna S., Alexeev, Dmitry G., Taraskina, Anastasiya Y., Nasyrova, Regina F., Krupitsky, Evgeny M., Shalikiani, Nino V., Bakulin, Igor G., Shcherbakov, Petr L., Skorodumova, Lyubov O., Larin, Andrei K., Kostryukova, Elena S., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Malanin, Sergey Y., Ismagilova, Ruzilya K., Grigoryeva, Tatiana V., Ilina, Elena N., Govorun, Vadim M.
Gepubliceerd in Microbiome (2017)

Genome analysis of E. coli isolated from Crohn’s disease patients

door Rakitina, Daria V., Manolov, Alexander I., Kanygina, Alexandra V., Garushyants, Sofya K., Baikova, Julia P., Alexeev, Dmitry G., Ladygina, Valentina G., Kostryukova, Elena S., Larin, Andrei K., Semashko, Tatiana A., Karpova, Irina Y., Babenko, Vladislav V., Ismagilova, Ruzilya K., Malanin, Sergei Y., Gelfand, Mikhail S., Ilina, Elena N., Gorodnichev, Roman B., Lisitsyna, Eugenia S., Aleshkin, Gennady I., Scherbakov, Petr L., Khalif, Igor L., Shapina, Marina V., Maev, Igor V., Andreev, Dmitry N., Govorun, Vadim M.
Gepubliceerd in BMC Genomics (2017)

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn’s disease discovered using metagenomic and genomic analyses

door Tyakht, Alexander V., Manolov, Alexander I., Kanygina, Alexandra V., Ischenko, Dmitry S., Kovarsky, Boris A., Popenko, Anna S., Pavlenko, Alexander V., Elizarova, Anna V., Rakitina, Daria V., Baikova, Julia P., Ladygina, Valentina G., Kostryukova, Elena S., Karpova, Irina Y., Semashko, Tatyana A., Larin, Andrei K., Grigoryeva, Tatyana V., Sinyagina, Mariya N., Malanin, Sergei Y., Shcherbakov, Petr L., Kharitonova, Anastasiya Y., Khalif, Igor L., Shapina, Marina V., Maev, Igor V., Andreev, Dmitriy N., Belousova, Elena A., Buzunova, Yulia M., Alexeev, Dmitry G., Govorun, Vadim M.
Gepubliceerd in BMC Genomics (2018)