Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations

著者: Kubo, Shintaroh, Li, Wenfei, Takada, Shoji
出版年 PLoS Comput Biol (2017)

How Cytoplasmic Dynein Couples ATP Hydrolysis Cycle to Diverse Stepping Motions: Kinetic Modeling

著者: Kubo, Shintaroh, Shima, Tomohiro, Takada, Shoji
出版年 Biophys J (2020)

Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase F(O) motor

著者: Kubo, Shintaroh, Niina, Toru, Takada, Shoji
出版年 Sci Rep (2020)

Resolving the data asynchronicity in high-speed atomic force microscopy measurement via the Kalman Smoother

著者: Kubo, Shintaroh, Kato, Suguru, Nakamura, Kazuyuki, Kodera, Noriyuki, Takada, Shoji
出版年 Sci Rep (2020)

Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model

著者: Unarta, Ilona Christy, Cao, Siqin, Kubo, Shintaroh, Wang, Wei, Cheung, Peter Pak-Hang, Gao, Xin, Takada, Shoji, Huang, Xuhui
出版年 Proc Natl Acad Sci U S A (2021)

Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins

著者: Ichikawa, Muneyoshi, Khalifa, Ahmad Abdelzaher Zaki, Kubo, Shintaroh, Dai, Daniel, Basu, Kaustuv, Maghrebi, Mohammad Amin Faghfor, Vargas, Javier, Bui, Khanh Huy
出版年 Proc Natl Acad Sci U S A (2019)

The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

著者: Khalifa, Ahmad Abdelzaher Zaki, Ichikawa, Muneyoshi, Dai, Daniel, Kubo, Shintaroh, Black, Corbin Steven, Peri, Katya, McAlear, Thomas S, Veyron, Simon, Yang, Shun Kai, Vargas, Javier, Bechstedt, Susanne, Trempe, Jean-François, Bui, Khanh Huy
出版年 eLife (2020)