RNA-Seq for Plant Pathogenic Bacteria

por Kimbrel, Jeffrey A., Di, Yanming, Cumbie, Jason S., Chang, Jeff H.
Publicado 2011

The Draft Genome Sequence of Nocardioides sp. Strain CF8 Reveals the Scope of Its Metabolic Capabilities

por Kimbrel, Jeffrey A., Chang, Jeff, Arp, Daniel J., Sayavedra-Soto, Luis A.
Publicado 2013

Combining multiple functional annotation tools increases coverage of metabolic annotation

por Griesemer, Marc, Kimbrel, Jeffrey A., Zhou, Carol E., Navid, Ali, D’haeseleer, Patrik
Publicado en BMC Genomics (2018)

Higher Order Asymptotics for Negative Binomial Regression Inferences from RNA-Sequencing Data

por Di, Yanming, Emerson, Sarah C., Schafer, Daniel W., Kimbrel, Jeffrey A., Chang, Jeff H.
Publicado 2013

Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molec...

por KIMBREL, JEFFREY A., GIVAN, SCOTT A., TEMPLE, TODD N., JOHNSON, KENNETH B., CHANG, JEFF H.
Publicado en Mol Plant Pathol (2011)

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

por Kimbrel, Jeffrey A., Thomas, William J., Jiang, Yuan, Creason, Allison L., Thireault, Caitlin A., Sachs, Joel L., Chang, Jeff H.
Publicado 2013

Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae)(1)

por Fox, Samuel E., Preece, Justin, Kimbrel, Jeffrey A., Marchini, Gina L., Sage, Abigail, Youens-Clark, Ken, Cruzan, Mitchell B., Jaiswal, Pankaj
Publicado 2013

Microbial Community Structure and Functional Potential Along a Hypersaline Gradient

por Kimbrel, Jeffrey A., Ballor, Nicholas, Wu, Yu-Wei, David, Maude M., Hazen, Terry C., Simmons, Blake A., Singer, Steven W., Jansson, Janet K.
Publicado en Front Microbiol (2018)

An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6

por Kimbrel, Jeffrey A, Givan, Scott A, Halgren, Anne B, Creason, Allison L, Mills, Dallice I, Banowetz, Gary M, Armstrong, Donald J, Chang, Jeff H
Publicado 2010

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

por Cumbie, Jason S., Kimbrel, Jeffrey A., Di, Yanming, Schafer, Daniel W., Wilhelm, Larry J., Fox, Samuel E., Sullivan, Christopher M., Curzon, Aron D., Carrington, James C., Mockler, Todd C., Chang, Jeff H.
Publicado 2011

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes

por Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S
Publicado en Nucleic Acids Res (2020)

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes

por Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S
Publicado en Nucleic Acids Res (2020)