Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks

by Verta, Jukka-Pekka, Jones, Felicity C
Published in eLife (2019)

Genome-wide recombination map construction from single individuals using linked-read sequencing

by Dréau, Andreea, Venu, Vrinda, Avdievich, Elena, Gaspar, Ludmila, Jones, Felicity C.
Published in Nat Commun (2019)

Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping

by Deagle, Bruce E, Jones, Felicity C, Absher, Devin M, Kingsley, David M, Reimchen, Thomas E
Published 2013

Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation

by Marques, David A., Jones, Felicity C., Di Palma, Federica, Kingsley, David M., Reimchen, Thomas E.
Published in Nat Ecol Evol (2018)

A recurrent regulatory change underlying altered expression and Wnt response of the stickleback armor plates gene EDA

by O'Brown, Natasha M, Summers, Brian R, Jones, Felicity C, Brady, Shannon D, Kingsley, David M
Published in eLife (2015)

Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments

by Marques, David A., Taylor, John S., Jones, Felicity C., Di Palma, Federica, Kingsley, David M., Reimchen, Thomas E.
Published in PLoS Biol (2017)

Population genomics of parallel phenotypic evolution in stickleback across stream–lake ecological transitions

by Deagle, Bruce E., Jones, Felicity C., Chan, Yingguang F., Absher, Devin M., Kingsley, David M., Reimchen, Thomas E.
Published 2012

Extent of QTL Reuse During Repeated Phenotypic Divergence of Sympatric Threespine Stickleback

by Conte, Gina L., Arnegard, Matthew E., Best, Jacob, Chan, Yingguang Frank, Jones, Felicity C., Kingsley, David M., Schluter, Dolph, Peichel, Catherine L.
Published in Genetics (2015)

Evolving New Skeletal Traits by cis-Regulatory Changes in Bone Morphogenetic Proteins

by Indjeian, Vahan B., Kingman, Garrett A., Jones, Felicity C., Guenther, Catherine A., Grimwood, Jane, Schmutz, Jeremy, Myers, Richard M., Kingsley, David M.
Published in Cell (2016)

Fitness maps to a large-effect locus in introduced stickleback populations

by Schluter, Dolph, Marchinko, Kerry B., Arnegard, Matthew E., Zhang, Haili, Brady, Shannon D., Jones, Felicity C., Bell, Michael A., Kingsley, David M.
Published in Proc Natl Acad Sci U S A (2021)

Detecting differential copy number variation between groups of samples

by Lowe, Craig B., Sanchez-Luege, Nicelio, Howes, Timothy R., Brady, Shannon D., Daugherty, Rhea R., Jones, Felicity C., Bell, Michael A., Kingsley, David M.
Published in Genome Res (2018)

Corrigendum: Detecting differential copy number variation between groups of samples

by Lowe, Craig B., Sanchez-Luege, Nicelio, Howes, Timothy R., Brady, Shannon D., Daugherty, Rhea R., Jones, Felicity C., Bell, Michael A., Kingsley, David M.
Published in Genome Res (2018)

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

by Jones, Felicity C, Chan, Yingguang Frank, Schmutz, Jeremy, Grimwood, Jane, Brady, Shannon, Southwick, Audrey, Absher, Devin, Myers, Rick M, Reimchen, Thomas E, Deagle, Bruce E, Schluter, Dolph, Kingsley, David M
Published 2011

A role for a neo-sex chromosome in stickleback speciation

by Kitano, Jun, Ross, Joseph A., Mori, Seiichi, Kume, Manabu, Jones, Felicity C., Chan, Yingguang F., Absher, Devin M., Grimwood, Jane, Schmutz, Jeremy, Myers, Richard M., Kingsley, David M., Peichel, Catherine L.
Published 2009

Genetic Architecture of Variation in the Lateral Line Sensory System of Threespine Sticklebacks

by Wark, Abigail R., Mills, Margaret G., Dang, Lam-Ha, Chan, Yingguang Frank, Jones, Felicity C., Brady, Shannon D., Absher, Devin M., Grimwood, Jane, Schmutz, Jeremy, Myers, Richard M., Kingsley, David M., Peichel, Catherine L.
Published 2012

Genetics of ecological divergence during speciation

by Arnegard, Matthew E., McGee, Matthew D., Matthews, Blake, Marchinko, Kerry B., Conte, Gina L., Kabir, Sahriar, Bedford, Nicole, Bergek, Sara, Chan, Yingguang Frank, Jones, Felicity C., Kingsley, David M., Peichel, Catherine L., Schluter, Dolph
Published 2014

Genetic coupling of female mate choice with polygenic ecological divergence facilitates stickleback speciation

by Bay, Rachael A., Arnegard, Matthew E., Conte, Gina L., Best, Jacob, Bedford, Nicole L., McCann, Shaugnessy R., Dubin, Matthew E., Chan, Yingguang Frank, Jones, Felicity C., Kingsley, David M., Schluter, Dolph, Peichel, Catherine L.
Published in Curr Biol (2017)

Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

by Chan, Yingguang Frank, Marks, Melissa E., Jones, Felicity C., Villarreal, Guadalupe, Shapiro, Michael D., Brady, Shannon D., Southwick, Audrey M., Absher, Devin M., Grimwood, Jane, Schmutz, Jeremy, Myers, Richard M., Petrov, Dmitri, Jónsson, Bjarni, Schluter, Dolph, Bell, Michael A., Kingsley, David M.
Published 2009

Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution

by Roberts Kingman, Garrett A., Vyas, Deven N., Jones, Felicity C., Brady, Shannon D., Chen, Heidi I., Reid, Kerry, Milhaven, Mark, Bertino, Thomas S., Aguirre, Windsor E., Heins, David C., von Hippel, Frank A., Park, Peter J., Kirch, Melanie, Absher, Devin M., Myers, Richard M., Di Palma, Federica, Bell, Michael A., Kingsley, David M., Veeramah, Krishna R.
Published in Sci Adv (2021)

The genomic basis of adaptive evolution in threespine sticklebacks

by Jones, Felicity C, Grabherr, Manfred G, Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C, White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C, Myers, Richard M, Miller, Craig T, Summers, Brian R, Knecht, Anne K, Brady, Shannon D, Zhang, Haili, Pollen, Alex A, Howes, Timothy, Amemiya, Chris, Lander, Eric S, Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M
Published 2012