Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data

Por Edwards, David J, Holt, Kathryn E
Publicado em 2013

<it>ModuleFinder </it>and <it>CoReg</it>: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants

Por Whelan James, Millar A Harvey, Holt Kathryn E
Publicado em 2006-04-01

ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants

Por Holt, Kathryn E, Millar, A Harvey, Whelan, James
Publicado em 2006

Navigating the future of bacterial molecular epidemiology

Por Baker, Stephen, Hanage, William P, Holt, Kathryn E
Publicado em 2010

Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants

Por Hogg, Geoff, Dimovski, Karolina, Hiley, Lester, Holt, Kathryn E.
Publicado em 2013

Short read sequence typing (SRST): multi-locus sequence types from short reads

Por Inouye, Michael, Conway, Thomas C, Zobel, Justin, Holt, Kathryn E
Publicado em 2012

A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant

Por Hamidian, Mohammad, Holt, Kathryn E., Pickard, Derek, Hall, Ruth M.
Publicado no J Antimicrob Chemother (2016)

Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1

Por Hamidian, Mohammad, Hawkey, Jane, Holt, Kathryn E., Hall, Ruth M.
Publicado no Genome Announc (2015)

Carbapenem and amikacin resistance on a large conjugative Acinetobacter baumannii plasmid

Por Nigro, Steven J., Holt, Kathryn E., Pickard, Derek, Hall, Ruth M.
Publicado no J Antimicrob Chemother (2015)

Bandage: interactive visualization of de novo genome assemblies

Por Wick, Ryan R., Schultz, Mark B., Zobel, Justin, Holt, Kathryn E.
Publicado no Bioinformatics (2015)

A GC1 Acinetobacter baumannii isolate carrying AbaR3 and the aminoglycoside resistance transposon TnaphA6 in a conjugative plasmid

Por Hamidian, Mohammad, Holt, Kathryn E., Pickard, Derek, Dougan, Gordon, Hall, Ruth M.
Publicado em 2014

Draft Genome Sequence of a Clinical Isolate of Serratia marcescens, Strain AH0650_Sm1

Por Wan, Yu, Gorrie, Claire L., Jenney, Adam, Mirceta, Mirjana, Holt, Kathryn E.
Publicado no Genome Announc (2015)

A conjugative plasmid carrying the carbapenem resistance gene bla(OXA-23) in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate

Por Hamidian, Mohammad, Kenyon, Johanna J., Holt, Kathryn E., Pickard, Derek, Hall, Ruth M.
Publicado em 2014

Insertions in the OCL1 locus of Acinetobacter baumannii lead to shortened lipooligosaccharides

Por Kenyon, Johanna J., Holt, Kathryn E., Pickard, Derek, Dougan, Gordon, Hall, Ruth M.
Publicado em 2014

Identification of a marker for two lineages within the GC1 clone of Acinetobacter baumannii

Por Hamidian, Mohammad, Wynn, Matthew, Holt, Kathryn E., Pickard, Derek, Dougan, Gordon, Hall, Ruth M.
Publicado em 2014

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

Por Holt, Kathryn E., Teo, Yik Y., Li, Heng, Nair, Satheesh, Dougan, Gordon, Wain, John, Parkhill, Julian
Publicado em 2009

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

Por Hawkey, Jane, Edwards, David J, Dimovski, Karolina, Hiley, Lester, Billman-Jacobe, Helen, Hogg, Geoff, Holt, Kathryn E
Publicado em 2013

Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1

Por Holt, Kathryn E., Hamidian, Mohammad, Kenyon, Johanna J., Wynn, Matthew T., Hawkey, Jane, Pickard, Derek, Hall, Ruth M.
Publicado no Genome Announc (2015)

Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?

Por Robins-Browne, Roy M., Holt, Kathryn E., Ingle, Danielle J., Hocking, Dianna M., Yang, Ji, Tauschek, Marija
Publicado no Front Cell Infect Microbiol (2016)

The diversity of Klebsiella pneumoniae surface polysaccharides

Por Follador, Rainer, Heinz, Eva, Wyres, Kelly L., Ellington, Matthew J., Kowarik, Michael, Holt, Kathryn E., Thomson, Nicholas R.
Publicado no Microb Genom (2016)