Problem solving handbook in computational biology and bioinformatics

Por Heath, Lenwood S, Ramakrishnan, Naren.
Publicado em c201

Identifying Splicing Regulatory Elements with de Bruijn Graphs

Por Badr, Eman, Heath, Lenwood S.
Publicado no J Comput Biol (2014)

CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements

Por Badr, Eman, Heath, Lenwood S.
Publicado no BMC Bioinformatics (2015)

A Network of SCOP Hidden Markov Models and Its Analysis

Por Zhang, Liqing, Watson, Layne T, Heath, Lenwood S
Publicado em 2011

REGEN: Ancestral Genome Reconstruction for Bacteria

Por Yang, Kuan, Heath, Lenwood S., Setubal, João C.
Publicado em 2012

Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data

Por Badr, Eman, ElHefnawi, Mahmoud, Heath, Lenwood S.
Publicado no PLoS One (2016)

Identification of regulatory modules in genome scale transcription regulatory networks

Por Song, Qi, Grene, Ruth, Heath, Lenwood S., Li, Song
Publicado no BMC Syst Biol (2017)

ClaMS: A Classifier for Metagenomic Sequences

Por Pati, Amrita, Heath, Lenwood S., Kyrpides, Nikos C., Ivanova, Natalia
Publicado em 2011

XcisClique: analysis of regulatory bicliques

Por Pati, Amrita, Vasquez-Robinet, Cecilia, Heath, Lenwood S, Grene, Ruth, Murali, TM
Publicado em 2006

Similarity-Based Codes Sequentially Assigned to Ebolavirus Genomes Are Informative of Species Membership, Associated Outbreaks, and Transmission Chains

Por Weisberg, Alexandra J., Elmarakeby, Haitham A., Heath, Lenwood S., Vinatzer, Boris A.
Publicado no Open Forum Infect Dis (2015)

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

Por Aghamirzaie, Delasa, Batra, Dhruv, Heath, Lenwood S., Schneider, Andrew, Grene, Ruth, Collakova, Eva
Publicado no BMC Genomics (2015)

MetaCompare: a computational pipeline for prioritizing environmental resistome risk

Por Oh, Min, Pruden, Amy, Chen, Chaoqi, Heath, Lenwood S, Xia, Kang, Zhang, Liqing
Publicado no FEMS Microbiol Ecol (2018)

CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining

Por Pati, Amrita, Jin, Ying, Klage, Karsten, Helm, Richard F., Heath, Lenwood S., Ramakrishnan, Naren
Publicado em 2008

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Por Arango-Argoty, Gustavo, Singh, Gargi, Heath, Lenwood S., Pruden, Amy, Xiao, Weidong, Zhang, Liqing
Publicado no PLoS One (2016)

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data

Por Aghamirzaie, Delasa, Raja Velmurugan, Karthik, Wu, Shuchi, Altarawy, Doaa, Heath, Lenwood S., Grene, Ruth
Publicado no F1000Res (2017)

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

Por Arango-Argoty, Gustavo, Garner, Emily, Pruden, Amy, Heath, Lenwood S., Vikesland, Peter, Zhang, Liqing
Publicado no Microbiome (2018)

H++: a server for estimating pK(a)s and adding missing hydrogens to macromolecules

Por Gordon, John C., Myers, Jonathan B., Folta, Timothy, Shoja, Valia, Heath, Lenwood S., Onufriev, Alexey
Publicado em 2005

Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos

Por Aghamirzaie, Delasa, Nabiyouni, Mahdi, Fang, Yihui, Klumas, Curtis, Heath, Lenwood S., Grene, Ruth, Collakova, Eva
Publicado em 2013

A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis

Por Ni, Ying, Aghamirzaie, Delasa, Elmarakeby, Haitham, Collakova, Eva, Li, Song, Grene, Ruth, Heath, Lenwood S.
Publicado no Front Plant Sci (2016)

Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce

Por Collakova, Eva, Klumas, Curtis, Suren, Haktan, Myers, Elijah, Heath, Lenwood S, Holliday, Jason A, Grene, Ruth
Publicado em 2013