Comparing biological networks via graph compression

по Hayashida, Morihiro, Akutsu, Tatsuya
Опубликовано 2010

Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures

по Zhao, Yang, Hayashida, Morihiro, Akutsu, Tatsuya
Опубликовано 2010

Survival Analysis by Penalized Regression and Matrix Factorization

по Lai, Yeuntyng, Hayashida, Morihiro, Akutsu, Tatsuya
Опубликовано 2013

Maximum margin classifier working in a set of strings

по Koyano, Hitoshi, Hayashida, Morihiro, Akutsu, Tatsuya
Опубликовано в: Proc Math Phys Eng Sci (2016)

LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length

по Bao, Yu, Hayashida, Morihiro, Akutsu, Tatsuya
Опубликовано в: BMC Bioinformatics (2016)

Conditional random field approach to prediction of protein-protein interactions using domain information

по Hayashida, Morihiro, Kamada, Mayumi, Song, Jiangning, Akutsu, Tatsuya
Опубликовано 2011

Prediction of Heterodimeric Protein Complexes from Weighted Protein-Protein Interaction Networks Using Novel Features and Kernel Functions

по Ruan, Peiying, Hayashida, Morihiro, Maruyama, Osamu, Akutsu, Tatsuya
Опубликовано 2013

Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso

по Hayashida, Morihiro, Kamada, Mayumi, Song, Jiangning, Akutsu, Tatsuya
Опубликовано 2013

Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels

по Ruan, Peiying, Hayashida, Morihiro, Maruyama, Osamu, Akutsu, Tatsuya
Опубликовано 2014

Prediction of Protein-Protein Interaction Strength Using Domain Features with Supervised Regression

по Kamada, Mayumi, Sakuma, Yusuke, Hayashida, Morihiro, Akutsu, Tatsuya
Опубликовано 2014

Parallelization of enumerating tree-like chemical compounds by breadth-first search order

по Hayashida, Morihiro, Jindalertudomdee, Jira, Zhao, Yang, Akutsu, Tatsuya
Опубликовано в: BMC Med Genomics (2015)

Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order

по Jindalertudomdee, Jira, Hayashida, Morihiro, Zhao, Yang, Akutsu, Tatsuya
Опубликовано в: BMC Bioinformatics (2016)

Improving prediction of heterodimeric protein complexes using combination with pairwise kernel

по Ruan, Peiying, Hayashida, Morihiro, Akutsu, Tatsuya, Vert, Jean-Philippe
Опубликовано в: BMC Bioinformatics (2018)

Grammar-based compression approach to extraction of common rules among multiple trees of glycans and RNAs

по Zhao, Yang, Hayashida, Morihiro, Cao, Yue, Hwang, Jaewook, Akutsu, Tatsuya
Опубликовано в: BMC Bioinformatics (2015)

Determining the minimum number of protein-protein interactions required to support known protein complexes

по Nakajima, Natsu, Hayashida, Morihiro, Jansson, Jesper, Maruyama, Osamu, Akutsu, Tatsuya
Опубликовано в: PLoS One (2018)

ncRNA-disease association prediction based on sequence information and tripartite network

по Mori, Takuya, Ngouv, Hayliang, Hayashida, Morihiro, Akutsu, Tatsuya, Nacher, Jose C.
Опубликовано в: BMC Syst Biol (2018)

Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks

по Hayashida, Morihiro, Tamura, Takeyuki, Akutsu, Tatsuya, Zhang, Shu-Qin, Ching, Wai-Ki
Опубликовано 2008

Algorithms for Finding Small Attractors in Boolean Networks

по Zhang, Shu-Qin, Hayashida, Morihiro, Akutsu, Tatsuya, Ching, Wai-Ki, Ng, Michael K
Опубликовано 2007

Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework

по Li, Fuyi, Chen, Jinxiang, Ge, Zongyuan, Wen, Ya, Yue, Yanwei, Hayashida, Morihiro, Baggag, Abdelkader, Bensmail, Halima, Song, Jiangning
Опубликовано в: Brief Bioinform (2020)

Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins

по Li, Chen, Ching Han Chang, Catherine, Nagel, Jeremy, Porebski, Benjamin T., Hayashida, Morihiro, Akutsu, Tatsuya, Song, Jiangning, Buckle, Ashley M.
Опубликовано в: Brief Bioinform (2016)