The Evolutionary Path to Extraintestinal Pathogenic, Drug-Resistant Escherichia coli Is Marked by Drastic Reduction in Detectable Recombination within the Core Genome

Por McNally, Alan, Cheng, Lu, Harris, Simon R., Corander, Jukka
Publicado em 2013

Comparative genome analysis of Wolbachia strain wAu

Por Sutton, Elizabeth R, Harris, Simon R, Parkhill, Julian, Sinkins, Steven P
Publicado no BMC Genomics (2014)

Bacterial genomes in epidemiology—present and future

Por Croucher, Nicholas J., Harris, Simon R., Grad, Yonatan H., Hanage, William P.
Publicado em 2013

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes

Por Judge, Kim, Harris, Simon R., Reuter, Sandra, Parkhill, Julian, Peacock, Sharon J.
Publicado no J Antimicrob Chemother (2015)

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

Por Carver, Tim, Harris, Simon R., Berriman, Matthew, Parkhill, Julian, McQuillan, Jacqueline A.
Publicado em 2012

A High-Resolution View of Genome-Wide Pneumococcal Transformation

Por Croucher, Nicholas J., Harris, Simon R., Barquist, Lars, Parkhill, Julian, Bentley, Stephen D.
Publicado em 2012

Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study

Por Casali, Nicola, Broda, Agnieszka, Harris, Simon R., Parkhill, Julian, Brown, Timothy, Drobniewski, Francis
Publicado no PLoS Med (2016)

The archaebacterial origin of eukaryotes

Por Cox, Cymon J., Foster, Peter G., Hirt, Robert P., Harris, Simon R., Embley, T. Martin
Publicado em 2008

Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution

Por Mostowy, Rafal, Croucher, Nicholas J., Hanage, William P., Harris, Simon R., Bentley, Stephen, Fraser, Christophe
Publicado em 2014

BamView: visualizing and interpretation of next-generation sequencing read alignments

Por Carver, Tim, Harris, Simon R., Otto, Thomas D., Berriman, Matthew, Parkhill, Julian, McQuillan, Jacqueline A.
Publicado em 2013

Circlator: automated circularization of genome assemblies using long sequencing reads

Por Hunt, Martin, Silva, Nishadi De, Otto, Thomas D., Parkhill, Julian, Keane, Jacqueline A., Harris, Simon R.
Publicado no Genome Biol (2015)

Horizontally Acquired Glycosyltransferase Operons Drive Salmonellae Lipopolysaccharide Diversity

Por Davies, Mark R., Broadbent, Sarah E., Harris, Simon R., Thomson, Nicholas R., van der Woude, Marjan W.
Publicado em 2013

Complete Genome Sequence of Bordetella pertussis D420

Por Boinett, Christine J., Harris, Simon R., Langridge, Gemma C., Trainor, Elizabeth A., Merkel, Tod J., Parkhill, Julian
Publicado no Genome Announc (2015)

Erratum for Boinett et al., Complete Genome Sequence of Bordetella pertussis D420

Por Boinett, Christine J., Harris, Simon R., Langridge, Gemma C., Trainor, Elizabeth A., Merkel, Tod J., Parkhill, Julian
Publicado no Genome Announc (2015)

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Por Page, Andrew J., Taylor, Ben, Delaney, Aidan J., Soares, Jorge, Seemann, Torsten, Keane, Jacqueline A., Harris, Simon R.
Publicado no Microb Genom (2016)

The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones

Por Castillo-Ramírez, Santiago, Harris, Simon R., Holden, Matthew T. G., He, Miao, Parkhill, Julian, Bentley, Stephen D., Feil, Edward J.
Publicado em 2011

Detection of recombination events in bacterial genomes from large population samples

Por Marttinen, Pekka, Hanage, William P., Croucher, Nicholas J., Connor, Thomas R., Harris, Simon R., Bentley, Stephen D., Corander, Jukka
Publicado em 2012

Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

Por David, Sophia, Sánchez-Busó, Leonor, Harris, Simon R., Marttinen, Pekka, Rusniok, Christophe, Buchrieser, Carmen, Harrison, Timothy G., Parkhill, Julian
Publicado no PLoS Genet (2017)

Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection

Por Harris, Simon R., Robinson, Carl, Steward, Karen F., Webb, Katy S., Paillot, Romain, Parkhill, Julian, Holden, Matthew T.G., Waller, Andrew S.
Publicado no Genome Res (2015)

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131

Por Kallonen, Teemu, Brodrick, Hayley J., Harris, Simon R., Corander, Jukka, Brown, Nicholas M., Martin, Veronique, Peacock, Sharon J., Parkhill, Julian
Publicado no Genome Res (2017)