GoGene: gene annotation in the fast lane

door Plake, Conrad, Royer, Loic, Winnenburg, Rainer, Hakenberg, Jörg, Schroeder, Michael
Gepubliceerd in 2009

A Comprehensive Benchmark of Kernel Methods to Extract Protein–Protein Interactions from Literature

door Tikk, Domonkos, Thomas, Philippe, Palaga, Peter, Hakenberg, Jörg, Leser, Ulf
Gepubliceerd in 2010

Literature Mining Solutions for Life Science Research

door Hakenberg, Jörg, Nenadic, Goran, Rebholz-Schuhmann, Dietrich, Kim, Jin-Dong
Gepubliceerd in 2013

DIVAS: a centralized genetic variant repository representing 150 000 individuals from multiple disease cohorts

door Cheng, Wei-Yi, Hakenberg, Jörg, Li, Shuyu Dan, Chen, Rong
Gepubliceerd in Bioinformatics (2016)

Gene mention normalization and interaction extraction with context models and sentence motifs

door Hakenberg, Jörg, Plake, Conrad, Royer, Loic, Strobelt, Hendrik, Leser, Ulf, Schroeder, Michael
Gepubliceerd in 2008

Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts

door Hakenberg, Jörg, Cheng, Wei-Yi, Thomas, Philippe, Wang, Ying-Chih, Uzilov, Andrew V., Chen, Rong
Gepubliceerd in BMC Bioinformatics (2016)

Systematic feature evaluation for gene name recognition

door Hakenberg, Jörg, Bickel, Steffen, Plake, Conrad, Brefeld, Ulf, Zahn, Hagen, Faulstich, Lukas, Leser, Ulf, Scheffer, Tobias
Gepubliceerd in 2005

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy

door Hakenberg Jörg, Gandon Fabien, Doms Andreas, Dietze Heiko, Andreopoulos Bill, Alexopoulou Dimitra, Khelif Khaled, Schroeder Michael, Wächter Thomas
Gepubliceerd in 2009-01-01

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy

door Alexopoulou, Dimitra, Andreopoulos, Bill, Dietze, Heiko, Doms, Andreas, Gandon, Fabien, Hakenberg, Jörg, Khelif, Khaled, Schroeder, Michael, Wächter, Thomas
Gepubliceerd in 2009

The GNAT library for local and remote gene mention normalization

door Hakenberg, Jörg, Gerner, Martin, Haeussler, Maximilian, Solt, Illés, Plake, Conrad, Schroeder, Michael, Gonzalez, Graciela, Nenadic, Goran, Bergman, Casey M.
Gepubliceerd in 2011

AN INTEGRATIVE PIPELINE FOR MULTI-MODAL DISCOVERY OF DISEASE RELATIONSHIPS

door Glicksberg, Benjamin S., Li, Li, Cheng, Wei-Yi, Shameer, Khader, Hakenberg, Jörg, Castellanos, Rafael, Ma, Meng, Shi, Lisong, Shah, Hardik, Dudley, Joel T., Chen, Rong
Gepubliceerd in Pac Symp Biocomput (2015)

Acute Intermittent Porphyria: Predicted Pathogenicity of HMBS Variants Indicates Extremely Low Penetrance of the Autosomal Dominant Disease

door Chen, Brenden, Solis-Villa, Constanza, Hakenberg, Jörg, Qiao, Wanqiong, Srinivasan, Ramakrishnan R., Yasuda, Makiko, Balwani, Manisha, Doheny, Dana, Peter, Inga, Chen, Rong, Desnick, Robert J.
Gepubliceerd in Hum Mutat (2016)

Disease-associated variants in different categories of disease located in distinct regulatory elements

door Ma, Meng, Ru, Ying, Chuang, Ling-Shiang, Hsu, Nai-Yun, Shi, Li-Song, Hakenberg, Jörg, Cheng, Wei-Yi, Uzilov, Andrew, Ding, Wei, Glicksberg, Benjamin S, Chen, Rong
Gepubliceerd in BMC Genomics (2015)

ClinLabGeneticist: a tool for clinical management of genetic variants from whole exome sequencing in clinical genetic laboratories

door Wang, Jinlian, Liao, Jun, Zhang, Jinglan, Cheng, Wei-Yi, Hakenberg, Jörg, Ma, Meng, Webb, Bryn D., Ramasamudram-chakravarthi, Rajasekar, Karger, Lisa, Mehta, Lakshmi, Kornreich, Ruth, Diaz, George A., Li, Shuyu, Edelmann, Lisa, Chen, Rong
Gepubliceerd in Genome Med (2015)

Predicting the clinical impact of human mutation with deep neural networks

door Sundaram, Laksshman, Gao, Hong, Padigepati, Samskruthi Reddy, McRae, Jeremy F., Li, Yanjun, Kosmicki, Jack A., Fritzilas, Nondas, Hakenberg, Jörg, Dutta, Anindita, Shon, John, Xu, Jinbo, Batzoglou, Serafim, Li, Xiaolin, Farh, Kyle Kai-How
Gepubliceerd in Nat Genet (2018)

Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks

door Glicksberg, Benjamin S., Li, Li, Badgeley, Marcus A., Shameer, Khader, Kosoy, Roman, Beckmann, Noam D., Pho, Nam, Hakenberg, Jörg, Ma, Meng, Ayers, Kristin L., Hoffman, Gabriel E., Dan Li, Shuyu, Schadt, Eric E., Patel, Chirag J., Chen, Rong, Dudley, Joel T.
Gepubliceerd in Bioinformatics (2016)

Overview of BioCreative II gene normalization

door Morgan, Alexander A, Lu, Zhiyong, Wang, Xinglong, Cohen, Aaron M, Fluck, Juliane, Ruch, Patrick, Divoli, Anna, Fundel, Katrin, Leaman, Robert, Hakenberg, Jörg, Sun, Chengjie, Liu, Heng-hui, Torres, Rafael, Krauthammer, Michael, Lau, William W, Liu, Hongfang, Hsu, Chun-Nan, Schuemie, Martijn, Cohen, K Bretonnel, Hirschman, Lynette
Gepubliceerd in 2008

Introducing meta-services for biomedical information extraction

door Leitner, Florian, Krallinger, Martin, Rodriguez-Penagos, Carlos, Hakenberg, Jörg, Plake, Conrad, Kuo, Cheng-Ju, Hsu, Chun-Nan, Tsai, Richard Tzong-Han, Hung, Hsi-Chuan, Lau, William W, Johnson, Calvin A, Sætre, Rune, Yoshida, Kazuhiro, Chen, Yan Hua, Kim, Sun, Shin, Soo-Yong, Zhang, Byoung-Tak, Baumgartner, William A, Hunter, Lawrence, Haddow, Barry, Matthews, Michael, Wang, Xinglong, Ruch, Patrick, Ehrler, Frédéric, Özgür, Arzucan, Erkan, Güneş, Radev, Dragomir R, Krauthammer, Michael, Luong, ThaiBinh, Hoffmann, Robert, Sander, Chris, Valencia, Alfonso
Gepubliceerd in 2008